Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03160

Experiment: R2A with Nickel (II) chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03155 and RR42_RS03160 are separated by 160 nucleotidesRR42_RS03160 and RR42_RS03165 are separated by 57 nucleotides RR42_RS03155: RR42_RS03155 - alpha/beta hydrolase, at 697,188 to 698,174 _RS03155 RR42_RS03160: RR42_RS03160 - hypothetical protein, at 698,335 to 698,775 _RS03160 RR42_RS03165: RR42_RS03165 - ADP-heptose--LPS heptosyltransferase, at 698,833 to 699,855 _RS03165 Position (kb) 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1at 697.370 kb on - strand, within RR42_RS03155at 697.509 kb on - strand, within RR42_RS03155at 697.509 kb on - strand, within RR42_RS03155at 697.522 kb on + strand, within RR42_RS03155at 697.627 kb on + strand, within RR42_RS03155at 697.627 kb on + strand, within RR42_RS03155at 697.627 kb on + strand, within RR42_RS03155at 697.628 kb on - strand, within RR42_RS03155at 697.807 kb on + strand, within RR42_RS03155at 697.864 kb on + strand, within RR42_RS03155at 697.864 kb on + strand, within RR42_RS03155at 697.864 kb on + strand, within RR42_RS03155at 697.864 kb on + strand, within RR42_RS03155at 697.966 kb on + strand, within RR42_RS03155at 698.298 kb on + strandat 698.298 kb on + strandat 698.337 kb on - strandat 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.447 kb on + strand, within RR42_RS03160at 698.448 kb on - strand, within RR42_RS03160at 698.448 kb on - strand, within RR42_RS03160at 698.448 kb on - strand, within RR42_RS03160at 698.448 kb on - strand, within RR42_RS03160at 698.462 kb on + strand, within RR42_RS03160at 698.462 kb on + strand, within RR42_RS03160at 698.462 kb on + strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.463 kb on - strand, within RR42_RS03160at 698.538 kb on + strand, within RR42_RS03160at 698.538 kb on + strand, within RR42_RS03160at 698.538 kb on + strand, within RR42_RS03160at 698.539 kb on - strand, within RR42_RS03160at 698.539 kb on - strand, within RR42_RS03160at 698.539 kb on - strand, within RR42_RS03160at 698.705 kb on - strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.731 kb on + strand, within RR42_RS03160at 698.732 kb on - strandat 698.732 kb on - strandat 698.732 kb on - strandat 698.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.25 mM
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697,370 - RR42_RS03155 0.18 +0.7
697,509 - RR42_RS03155 0.33 -0.1
697,509 - RR42_RS03155 0.33 +1.1
697,522 + RR42_RS03155 0.34 +0.6
697,627 + RR42_RS03155 0.44 +0.2
697,627 + RR42_RS03155 0.44 -0.2
697,627 + RR42_RS03155 0.44 +1.5
697,628 - RR42_RS03155 0.45 +1.3
697,807 + RR42_RS03155 0.63 +0.5
697,864 + RR42_RS03155 0.68 +0.3
697,864 + RR42_RS03155 0.68 -0.0
697,864 + RR42_RS03155 0.68 +1.1
697,864 + RR42_RS03155 0.68 +0.1
697,966 + RR42_RS03155 0.79 -0.3
698,298 + -0.1
698,298 + -0.4
698,337 - +0.4
698,447 + RR42_RS03160 0.25 -1.9
698,447 + RR42_RS03160 0.25 -0.8
698,447 + RR42_RS03160 0.25 -0.0
698,447 + RR42_RS03160 0.25 +0.8
698,447 + RR42_RS03160 0.25 +0.3
698,447 + RR42_RS03160 0.25 +1.0
698,448 - RR42_RS03160 0.26 +0.1
698,448 - RR42_RS03160 0.26 +0.1
698,448 - RR42_RS03160 0.26 -2.1
698,448 - RR42_RS03160 0.26 +0.6
698,462 + RR42_RS03160 0.29 +0.5
698,462 + RR42_RS03160 0.29 +0.3
698,462 + RR42_RS03160 0.29 +0.3
698,463 - RR42_RS03160 0.29 +0.2
698,463 - RR42_RS03160 0.29 +0.1
698,463 - RR42_RS03160 0.29 +0.9
698,463 - RR42_RS03160 0.29 +0.7
698,463 - RR42_RS03160 0.29 -0.5
698,538 + RR42_RS03160 0.46 +1.0
698,538 + RR42_RS03160 0.46 +0.2
698,538 + RR42_RS03160 0.46 -0.5
698,539 - RR42_RS03160 0.46 -0.4
698,539 - RR42_RS03160 0.46 +0.2
698,539 - RR42_RS03160 0.46 +0.2
698,705 - RR42_RS03160 0.84 -2.8
698,731 + RR42_RS03160 0.90 +0.2
698,731 + RR42_RS03160 0.90 +0.4
698,731 + RR42_RS03160 0.90 +0.2
698,731 + RR42_RS03160 0.90 -0.1
698,731 + RR42_RS03160 0.90 +0.4
698,731 + RR42_RS03160 0.90 -1.1
698,731 + RR42_RS03160 0.90 -1.2
698,732 - +0.3
698,732 - +0.4
698,732 - +1.2
698,732 - +0.2

Or see this region's nucleotide sequence