Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18150

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18145 and HSERO_RS18150 are separated by 14 nucleotidesHSERO_RS18150 and HSERO_RS18155 are separated by 303 nucleotides HSERO_RS18145: HSERO_RS18145 - membrane protein, at 4,168,207 to 4,168,587 _RS18145 HSERO_RS18150: HSERO_RS18150 - hypothetical protein, at 4,168,602 to 4,168,886 _RS18150 HSERO_RS18155: HSERO_RS18155 - major facilitator transporter, at 4,169,190 to 4,170,455 _RS18155 Position (kb) 4168 4169Strain fitness (log2 ratio) -1 0 1at 4167.647 kb on + strandat 4167.647 kb on + strandat 4168.073 kb on + strandat 4168.487 kb on - strand, within HSERO_RS18145at 4168.510 kb on + strand, within HSERO_RS18145at 4168.663 kb on - strand, within HSERO_RS18150at 4169.237 kb on + strandat 4169.438 kb on - strand, within HSERO_RS18155at 4169.496 kb on - strand, within HSERO_RS18155at 4169.641 kb on + strand, within HSERO_RS18155at 4169.697 kb on - strand, within HSERO_RS18155at 4169.854 kb on + strand, within HSERO_RS18155

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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4,167,647 + -0.7
4,167,647 + -1.6
4,168,073 + -0.8
4,168,487 - HSERO_RS18145 0.73 -0.0
4,168,510 + HSERO_RS18145 0.80 +1.2
4,168,663 - HSERO_RS18150 0.21 +0.4
4,169,237 + -0.7
4,169,438 - HSERO_RS18155 0.20 -0.0
4,169,496 - HSERO_RS18155 0.24 -0.5
4,169,641 + HSERO_RS18155 0.36 -0.3
4,169,697 - HSERO_RS18155 0.40 +0.4
4,169,854 + HSERO_RS18155 0.52 +0.4

Or see this region's nucleotide sequence