Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11010

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10995 and HSERO_RS11000 are separated by 52 nucleotidesHSERO_RS11000 and HSERO_RS11005 are separated by 67 nucleotidesHSERO_RS11005 and HSERO_RS11010 overlap by 8 nucleotidesHSERO_RS11010 and HSERO_RS11015 are separated by 130 nucleotides HSERO_RS10995: HSERO_RS10995 - hypothetical protein, at 2,479,398 to 2,480,984 _RS10995 HSERO_RS11000: HSERO_RS11000 - single-stranded DNA-binding protein, at 2,481,037 to 2,481,486 _RS11000 HSERO_RS11005: HSERO_RS11005 - cyclase, at 2,481,554 to 2,481,985 _RS11005 HSERO_RS11010: HSERO_RS11010 - RnfH, at 2,481,978 to 2,482,283 _RS11010 HSERO_RS11015: HSERO_RS11015 - inosine 5'-monophosphate dehydrogenase, at 2,482,414 to 2,483,883 _RS11015 Position (kb) 2481 2482 2483Strain fitness (log2 ratio) -1 0 1at 2482.034 kb on + strand, within HSERO_RS11010at 2482.093 kb on + strand, within HSERO_RS11010at 2482.258 kb on + strandat 2482.277 kb on + strandat 2482.285 kb on - strandat 2482.363 kb on - strandat 2482.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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2,482,034 + HSERO_RS11010 0.18 +0.4
2,482,093 + HSERO_RS11010 0.38 +0.7
2,482,258 + -0.5
2,482,277 + -0.3
2,482,285 - -1.3
2,482,363 - -0.1
2,482,391 + -0.5

Or see this region's nucleotide sequence