Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10805

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10800 and HSERO_RS10805 are separated by 57 nucleotidesHSERO_RS10805 and HSERO_RS10810 are separated by 327 nucleotides HSERO_RS10800: HSERO_RS10800 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 2,427,056 to 2,427,889 _RS10800 HSERO_RS10805: HSERO_RS10805 - succinyldiaminopimelate aminotransferase, at 2,427,947 to 2,429,158 _RS10805 HSERO_RS10810: HSERO_RS10810 - membrane protein, at 2,429,486 to 2,431,297 _RS10810 Position (kb) 2427 2428 2429 2430Strain fitness (log2 ratio) -1 0 1 2 3at 2428.218 kb on + strand, within HSERO_RS10805at 2428.817 kb on + strand, within HSERO_RS10805at 2428.867 kb on - strand, within HSERO_RS10805at 2429.179 kb on - strandat 2429.641 kb on + strandat 2429.836 kb on + strand, within HSERO_RS10810at 2429.933 kb on - strand, within HSERO_RS10810at 2430.044 kb on - strand, within HSERO_RS10810at 2430.078 kb on + strandat 2430.148 kb on - strand, within HSERO_RS10810

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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2,428,218 + HSERO_RS10805 0.22 +1.5
2,428,817 + HSERO_RS10805 0.72 +0.7
2,428,867 - HSERO_RS10805 0.76 +2.9
2,429,179 - +0.1
2,429,641 + -0.1
2,429,836 + HSERO_RS10810 0.19 +0.2
2,429,933 - HSERO_RS10810 0.25 +0.0
2,430,044 - HSERO_RS10810 0.31 -0.2
2,430,078 + +0.9
2,430,148 - HSERO_RS10810 0.37 +0.2

Or see this region's nucleotide sequence