Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04355

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04345 and HSERO_RS04350 are separated by 191 nucleotidesHSERO_RS04350 and HSERO_RS04355 are separated by 298 nucleotidesHSERO_RS04355 and HSERO_RS04360 are separated by 49 nucleotides HSERO_RS04345: HSERO_RS04345 - membrane protein, at 960,425 to 961,633 _RS04345 HSERO_RS04350: HSERO_RS04350 - 30S ribosomal protein S21, at 961,825 to 962,037 _RS04350 HSERO_RS04355: HSERO_RS04355 - aspartyl-tRNA amidotransferase subunit B, at 962,336 to 962,782 _RS04355 HSERO_RS04360: HSERO_RS04360 - DNA primase, at 962,832 to 964,628 _RS04360 Position (kb) 962 963Strain fitness (log2 ratio) -1 0 1 2at 961.437 kb on + strand, within HSERO_RS04345at 961.594 kb on + strandat 961.628 kb on - strandat 962.316 kb on + strandat 962.401 kb on + strand, within HSERO_RS04355at 962.533 kb on + strand, within HSERO_RS04355at 962.695 kb on + strand, within HSERO_RS04355at 962.695 kb on + strandat 962.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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961,437 + HSERO_RS04345 0.84 -0.2
961,594 + +0.2
961,628 - -0.2
962,316 + -0.3
962,401 + HSERO_RS04355 0.15 +2.3
962,533 + HSERO_RS04355 0.44 +0.1
962,695 + HSERO_RS04355 0.80 +0.4
962,695 + +0.2
962,758 + +0.1

Or see this region's nucleotide sequence