Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04100

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04095 and HSERO_RS04100 are separated by 14 nucleotidesHSERO_RS04100 and HSERO_RS04105 are separated by 525 nucleotides HSERO_RS04095: HSERO_RS04095 - hypothetical protein, at 895,179 to 896,624 _RS04095 HSERO_RS04100: HSERO_RS04100 - phosphoribosyltransferase, at 896,639 to 897,148 _RS04100 HSERO_RS04105: HSERO_RS04105 - hypothetical protein, at 897,674 to 898,762 _RS04105 Position (kb) 896 897 898Strain fitness (log2 ratio) -1 0 1at 895.674 kb on - strand, within HSERO_RS04095at 896.064 kb on + strand, within HSERO_RS04095at 896.180 kb on + strand, within HSERO_RS04095at 896.409 kb on + strand, within HSERO_RS04095at 896.618 kb on + strandat 896.900 kb on + strand, within HSERO_RS04100at 896.968 kb on + strand, within HSERO_RS04100at 896.968 kb on + strand, within HSERO_RS04100at 897.136 kb on + strandat 897.144 kb on + strandat 897.145 kb on - strandat 897.251 kb on + strandat 897.399 kb on - strandat 897.417 kb on - strandat 897.969 kb on + strandat 897.976 kb on + strand, within HSERO_RS04105

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM
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895,674 - HSERO_RS04095 0.34 -0.2
896,064 + HSERO_RS04095 0.61 -0.9
896,180 + HSERO_RS04095 0.69 +0.4
896,409 + HSERO_RS04095 0.85 +0.8
896,618 + +0.6
896,900 + HSERO_RS04100 0.51 +0.2
896,968 + HSERO_RS04100 0.65 +1.2
896,968 + HSERO_RS04100 0.65 +0.3
897,136 + -0.3
897,144 + -0.7
897,145 - -0.1
897,251 + +0.5
897,399 - +1.5
897,417 - -1.2
897,969 + +1.2
897,976 + HSERO_RS04105 0.28 +0.2

Or see this region's nucleotide sequence