Experiment: Minimal media pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26855 and AO356_26860 are separated by 21 nucleotides AO356_26860 and AO356_26865 are separated by 19 nucleotides
AO356_26855: AO356_26855 - hypothetical protein, at 6,115,240 to 6,116,325
_26855
AO356_26860: AO356_26860 - hypothetical protein, at 6,116,347 to 6,117,225
_26860
AO356_26865: AO356_26865 - hypothetical protein, at 6,117,245 to 6,118,504
_26865
Position (kb)
6116
6117
6118 Strain fitness (log2 ratio)
-2
-1
0
1 at 6115.384 kb on - strand, within AO356_26855 at 6115.500 kb on + strand, within AO356_26855 at 6115.547 kb on - strand, within AO356_26855 at 6115.547 kb on - strand, within AO356_26855 at 6115.547 kb on - strand, within AO356_26855 at 6115.644 kb on + strand, within AO356_26855 at 6115.644 kb on + strand, within AO356_26855 at 6115.661 kb on - strand, within AO356_26855 at 6115.662 kb on + strand, within AO356_26855 at 6115.663 kb on - strand, within AO356_26855 at 6115.663 kb on - strand, within AO356_26855 at 6115.845 kb on - strand, within AO356_26855 at 6115.845 kb on - strand, within AO356_26855 at 6115.945 kb on + strand, within AO356_26855 at 6115.946 kb on - strand, within AO356_26855 at 6116.093 kb on - strand, within AO356_26855 at 6116.104 kb on + strand, within AO356_26855 at 6116.104 kb on + strand, within AO356_26855 at 6116.104 kb on + strand, within AO356_26855 at 6116.193 kb on - strand, within AO356_26855 at 6116.200 kb on + strand, within AO356_26855 at 6116.211 kb on + strand, within AO356_26855 at 6116.212 kb on - strand, within AO356_26855 at 6116.212 kb on - strand, within AO356_26855 at 6116.311 kb on - strand at 6116.311 kb on - strand at 6116.311 kb on - strand at 6116.324 kb on - strand at 6116.407 kb on + strand at 6116.407 kb on + strand at 6116.408 kb on - strand at 6116.408 kb on - strand at 6116.419 kb on + strand at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.476 kb on + strand, within AO356_26860 at 6116.477 kb on - strand, within AO356_26860 at 6116.477 kb on - strand, within AO356_26860 at 6116.477 kb on - strand, within AO356_26860 at 6116.479 kb on + strand, within AO356_26860 at 6116.479 kb on + strand, within AO356_26860 at 6116.590 kb on + strand, within AO356_26860 at 6116.599 kb on - strand, within AO356_26860 at 6116.692 kb on + strand, within AO356_26860 at 6116.790 kb on + strand, within AO356_26860 at 6116.791 kb on - strand, within AO356_26860 at 6116.806 kb on + strand, within AO356_26860 at 6116.807 kb on - strand, within AO356_26860 at 6116.923 kb on + strand, within AO356_26860 at 6116.923 kb on + strand, within AO356_26860 at 6116.924 kb on - strand, within AO356_26860 at 6116.924 kb on - strand, within AO356_26860 at 6117.003 kb on + strand, within AO356_26860 at 6117.004 kb on - strand, within AO356_26860 at 6117.064 kb on + strand, within AO356_26860 at 6117.065 kb on - strand, within AO356_26860 at 6117.066 kb on + strand, within AO356_26860 at 6117.067 kb on - strand, within AO356_26860 at 6117.071 kb on + strand, within AO356_26860 at 6117.072 kb on - strand, within AO356_26860 at 6117.072 kb on - strand, within AO356_26860 at 6117.156 kb on - strand at 6117.156 kb on - strand at 6117.156 kb on - strand at 6117.242 kb on + strand at 6117.242 kb on + strand at 6117.243 kb on - strand at 6117.243 kb on - strand at 6117.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH8 remove 6,115,384 - AO356_26855 0.13 +0.2 6,115,500 + AO356_26855 0.24 -0.7 6,115,547 - AO356_26855 0.28 +0.8 6,115,547 - AO356_26855 0.28 -1.5 6,115,547 - AO356_26855 0.28 -0.7 6,115,644 + AO356_26855 0.37 +0.0 6,115,644 + AO356_26855 0.37 +0.6 6,115,661 - AO356_26855 0.39 +0.4 6,115,662 + AO356_26855 0.39 +0.7 6,115,663 - AO356_26855 0.39 -1.0 6,115,663 - AO356_26855 0.39 -0.6 6,115,845 - AO356_26855 0.56 +0.1 6,115,845 - AO356_26855 0.56 -0.1 6,115,945 + AO356_26855 0.65 +0.6 6,115,946 - AO356_26855 0.65 -0.5 6,116,093 - AO356_26855 0.79 +0.6 6,116,104 + AO356_26855 0.80 +0.5 6,116,104 + AO356_26855 0.80 +0.5 6,116,104 + AO356_26855 0.80 +0.3 6,116,193 - AO356_26855 0.88 +0.0 6,116,200 + AO356_26855 0.88 +0.5 6,116,211 + AO356_26855 0.89 +0.5 6,116,212 - AO356_26855 0.90 +1.1 6,116,212 - AO356_26855 0.90 -0.8 6,116,311 - -0.1 6,116,311 - +0.2 6,116,311 - +1.0 6,116,324 - +0.4 6,116,407 + +0.1 6,116,407 + +0.0 6,116,408 - +0.5 6,116,408 - +0.7 6,116,419 + +0.8 6,116,476 + AO356_26860 0.15 -0.4 6,116,476 + AO356_26860 0.15 +0.2 6,116,476 + AO356_26860 0.15 -2.5 6,116,476 + AO356_26860 0.15 +1.0 6,116,476 + AO356_26860 0.15 +1.1 6,116,476 + AO356_26860 0.15 +0.6 6,116,477 - AO356_26860 0.15 +1.0 6,116,477 - AO356_26860 0.15 +0.7 6,116,477 - AO356_26860 0.15 +0.1 6,116,479 + AO356_26860 0.15 +0.5 6,116,479 + AO356_26860 0.15 +0.6 6,116,590 + AO356_26860 0.28 -0.3 6,116,599 - AO356_26860 0.29 +1.5 6,116,692 + AO356_26860 0.39 +0.6 6,116,790 + AO356_26860 0.50 +0.2 6,116,791 - AO356_26860 0.51 -0.6 6,116,806 + AO356_26860 0.52 +0.1 6,116,807 - AO356_26860 0.52 +0.3 6,116,923 + AO356_26860 0.66 -1.6 6,116,923 + AO356_26860 0.66 -0.2 6,116,924 - AO356_26860 0.66 -0.2 6,116,924 - AO356_26860 0.66 +0.9 6,117,003 + AO356_26860 0.75 +0.5 6,117,004 - AO356_26860 0.75 +1.2 6,117,064 + AO356_26860 0.82 +0.2 6,117,065 - AO356_26860 0.82 +0.0 6,117,066 + AO356_26860 0.82 -1.2 6,117,067 - AO356_26860 0.82 +0.5 6,117,071 + AO356_26860 0.82 -0.5 6,117,072 - AO356_26860 0.82 +0.6 6,117,072 - AO356_26860 0.82 +1.1 6,117,156 - +0.0 6,117,156 - +0.6 6,117,156 - -0.1 6,117,242 + +0.3 6,117,242 + -0.8 6,117,243 - +1.1 6,117,243 - +0.9 6,117,243 - -0.2
Or see this region's nucleotide sequence