Experiment: Minimal media pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19720 and AO356_19725 are separated by 273 nucleotides AO356_19725 and AO356_19730 are separated by 70 nucleotides AO356_19730 and AO356_19735 are separated by 158 nucleotides AO356_19735 and AO356_19740 overlap by 4 nucleotides
AO356_19720: AO356_19720 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,423,750 to 4,425,063
_19720
AO356_19725: AO356_19725 - hypothetical protein, at 4,425,337 to 4,426,074
_19725
AO356_19730: AO356_19730 - hypothetical protein, at 4,426,145 to 4,426,396
_19730
AO356_19735: AO356_19735 - thioesterase, at 4,426,555 to 4,427,031
_19735
AO356_19740: AO356_19740 - thioesterase, at 4,427,028 to 4,427,489
_19740
Position (kb)
4425
4426
4427 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4424.358 kb on - strand, within AO356_19720 at 4424.473 kb on + strand, within AO356_19720 at 4424.473 kb on + strand, within AO356_19720 at 4424.473 kb on + strand, within AO356_19720 at 4424.473 kb on + strand, within AO356_19720 at 4424.474 kb on - strand, within AO356_19720 at 4424.474 kb on - strand, within AO356_19720 at 4424.554 kb on + strand, within AO356_19720 at 4424.554 kb on + strand, within AO356_19720 at 4424.555 kb on - strand, within AO356_19720 at 4424.555 kb on - strand, within AO356_19720 at 4424.555 kb on - strand, within AO356_19720 at 4424.565 kb on + strand, within AO356_19720 at 4424.565 kb on + strand, within AO356_19720 at 4424.565 kb on + strand, within AO356_19720 at 4424.566 kb on - strand, within AO356_19720 at 4424.566 kb on - strand, within AO356_19720 at 4424.566 kb on - strand, within AO356_19720 at 4424.566 kb on - strand, within AO356_19720 at 4424.566 kb on - strand, within AO356_19720 at 4424.566 kb on - strand, within AO356_19720 at 4424.566 kb on - strand, within AO356_19720 at 4424.566 kb on - strand, within AO356_19720 at 4424.659 kb on + strand, within AO356_19720 at 4424.686 kb on + strand, within AO356_19720 at 4424.687 kb on - strand, within AO356_19720 at 4424.788 kb on + strand, within AO356_19720 at 4424.789 kb on - strand, within AO356_19720 at 4425.062 kb on - strand at 4425.089 kb on - strand at 4425.158 kb on + strand at 4425.159 kb on - strand at 4425.301 kb on + strand at 4425.301 kb on + strand at 4425.302 kb on - strand at 4425.302 kb on - strand at 4425.302 kb on - strand at 4425.406 kb on + strand at 4425.406 kb on + strand at 4425.718 kb on + strand, within AO356_19725 at 4425.718 kb on + strand, within AO356_19725 at 4425.718 kb on + strand, within AO356_19725 at 4425.719 kb on - strand, within AO356_19725 at 4425.754 kb on + strand, within AO356_19725 at 4425.755 kb on - strand, within AO356_19725 at 4425.755 kb on - strand, within AO356_19725 at 4425.898 kb on + strand, within AO356_19725 at 4425.898 kb on + strand, within AO356_19725 at 4425.898 kb on + strand, within AO356_19725 at 4425.898 kb on + strand, within AO356_19725 at 4425.898 kb on + strand, within AO356_19725 at 4425.901 kb on + strand, within AO356_19725 at 4425.902 kb on - strand, within AO356_19725 at 4425.983 kb on - strand, within AO356_19725 at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.024 kb on + strand at 4426.025 kb on - strand at 4426.025 kb on - strand at 4426.025 kb on - strand at 4426.025 kb on - strand at 4426.025 kb on - strand at 4426.025 kb on - strand at 4426.025 kb on - strand at 4426.025 kb on - strand at 4426.025 kb on - strand at 4426.129 kb on + strand at 4426.130 kb on - strand at 4426.135 kb on + strand at 4426.135 kb on + strand at 4426.136 kb on - strand at 4426.143 kb on + strand at 4426.156 kb on + strand at 4426.157 kb on - strand at 4426.157 kb on - strand at 4426.255 kb on + strand, within AO356_19730 at 4426.390 kb on + strand at 4426.391 kb on - strand at 4426.411 kb on + strand at 4426.420 kb on - strand at 4426.423 kb on + strand at 4426.423 kb on + strand at 4426.423 kb on + strand at 4426.423 kb on + strand at 4426.424 kb on - strand at 4426.424 kb on - strand at 4426.424 kb on - strand at 4426.469 kb on + strand at 4426.469 kb on + strand at 4426.470 kb on - strand at 4426.475 kb on + strand at 4426.475 kb on + strand at 4426.475 kb on + strand at 4426.476 kb on - strand at 4426.476 kb on - strand at 4426.476 kb on - strand at 4426.476 kb on - strand at 4426.477 kb on + strand at 4426.477 kb on + strand at 4426.477 kb on + strand at 4426.477 kb on + strand at 4426.477 kb on + strand at 4426.477 kb on + strand at 4426.478 kb on - strand at 4426.478 kb on - strand at 4426.479 kb on + strand at 4426.479 kb on + strand at 4426.480 kb on - strand at 4426.534 kb on + strand at 4426.534 kb on + strand at 4426.534 kb on + strand at 4426.535 kb on - strand at 4426.800 kb on + strand, within AO356_19735 at 4426.822 kb on + strand, within AO356_19735 at 4426.822 kb on + strand, within AO356_19735 at 4426.822 kb on + strand, within AO356_19735 at 4426.822 kb on + strand, within AO356_19735 at 4426.822 kb on + strand, within AO356_19735 at 4426.822 kb on + strand, within AO356_19735 at 4426.823 kb on - strand, within AO356_19735 at 4426.823 kb on - strand, within AO356_19735 at 4426.856 kb on - strand, within AO356_19735 at 4426.856 kb on - strand, within AO356_19735 at 4426.916 kb on - strand, within AO356_19735
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH8 remove 4,424,358 - AO356_19720 0.46 -0.1 4,424,473 + AO356_19720 0.55 +0.2 4,424,473 + AO356_19720 0.55 +1.0 4,424,473 + AO356_19720 0.55 +1.4 4,424,473 + AO356_19720 0.55 -0.0 4,424,474 - AO356_19720 0.55 +0.0 4,424,474 - AO356_19720 0.55 +0.3 4,424,554 + AO356_19720 0.61 +0.4 4,424,554 + AO356_19720 0.61 +0.6 4,424,555 - AO356_19720 0.61 +0.4 4,424,555 - AO356_19720 0.61 -0.4 4,424,555 - AO356_19720 0.61 +0.1 4,424,565 + AO356_19720 0.62 +0.6 4,424,565 + AO356_19720 0.62 -0.1 4,424,565 + AO356_19720 0.62 +1.0 4,424,566 - AO356_19720 0.62 +0.4 4,424,566 - AO356_19720 0.62 +1.1 4,424,566 - AO356_19720 0.62 -0.9 4,424,566 - AO356_19720 0.62 +1.1 4,424,566 - AO356_19720 0.62 +0.8 4,424,566 - AO356_19720 0.62 -0.1 4,424,566 - AO356_19720 0.62 +0.5 4,424,566 - AO356_19720 0.62 +1.0 4,424,659 + AO356_19720 0.69 -0.5 4,424,686 + AO356_19720 0.71 +1.0 4,424,687 - AO356_19720 0.71 +0.9 4,424,788 + AO356_19720 0.79 +0.1 4,424,789 - AO356_19720 0.79 +0.7 4,425,062 - -0.3 4,425,089 - +0.7 4,425,158 + +1.2 4,425,159 - -0.7 4,425,301 + +0.2 4,425,301 + -1.6 4,425,302 - -0.0 4,425,302 - -0.1 4,425,302 - -0.2 4,425,406 + -0.6 4,425,406 + -2.1 4,425,718 + AO356_19725 0.52 +0.7 4,425,718 + AO356_19725 0.52 +1.1 4,425,718 + AO356_19725 0.52 +1.5 4,425,719 - AO356_19725 0.52 +1.5 4,425,754 + AO356_19725 0.57 -0.5 4,425,755 - AO356_19725 0.57 +1.5 4,425,755 - AO356_19725 0.57 +0.5 4,425,898 + AO356_19725 0.76 +0.4 4,425,898 + AO356_19725 0.76 +0.4 4,425,898 + AO356_19725 0.76 +0.7 4,425,898 + AO356_19725 0.76 +0.4 4,425,898 + AO356_19725 0.76 +0.5 4,425,901 + AO356_19725 0.76 +0.0 4,425,902 - AO356_19725 0.77 +0.8 4,425,983 - AO356_19725 0.88 -0.6 4,426,024 + +0.1 4,426,024 + +0.1 4,426,024 + +0.2 4,426,024 + +0.9 4,426,024 + +0.8 4,426,024 + -0.4 4,426,024 + +1.3 4,426,024 + +0.3 4,426,024 + +0.6 4,426,024 + -0.1 4,426,025 - +1.0 4,426,025 - +0.0 4,426,025 - +0.9 4,426,025 - -0.2 4,426,025 - +0.4 4,426,025 - +1.5 4,426,025 - +0.6 4,426,025 - +0.0 4,426,025 - +1.1 4,426,129 + +1.8 4,426,130 - +0.1 4,426,135 + -1.0 4,426,135 + -1.6 4,426,136 - -0.5 4,426,143 + -0.1 4,426,156 + +0.1 4,426,157 - +0.5 4,426,157 - -0.3 4,426,255 + AO356_19730 0.44 -0.1 4,426,390 + +0.2 4,426,391 - +0.4 4,426,411 + +0.1 4,426,420 - +0.4 4,426,423 + +0.3 4,426,423 + +0.1 4,426,423 + +0.9 4,426,423 + +0.2 4,426,424 - +0.4 4,426,424 - +0.5 4,426,424 - +0.8 4,426,469 + -0.1 4,426,469 + +0.9 4,426,470 - +0.4 4,426,475 + +0.5 4,426,475 + -0.0 4,426,475 + -1.1 4,426,476 - -0.3 4,426,476 - -0.4 4,426,476 - +0.6 4,426,476 - +0.1 4,426,477 + -0.9 4,426,477 + -0.7 4,426,477 + +0.3 4,426,477 + +0.4 4,426,477 + -1.1 4,426,477 + -0.1 4,426,478 - -0.8 4,426,478 - -0.1 4,426,479 + +0.6 4,426,479 + -0.7 4,426,480 - +0.8 4,426,534 + -0.5 4,426,534 + -0.4 4,426,534 + +1.0 4,426,535 - +0.0 4,426,800 + AO356_19735 0.51 +0.3 4,426,822 + AO356_19735 0.56 +0.5 4,426,822 + AO356_19735 0.56 +0.1 4,426,822 + AO356_19735 0.56 -0.1 4,426,822 + AO356_19735 0.56 +1.4 4,426,822 + AO356_19735 0.56 -0.5 4,426,822 + AO356_19735 0.56 +0.0 4,426,823 - AO356_19735 0.56 -0.6 4,426,823 - AO356_19735 0.56 -0.3 4,426,856 - AO356_19735 0.63 +1.0 4,426,856 - AO356_19735 0.63 +0.9 4,426,916 - AO356_19735 0.76 +0.4
Or see this region's nucleotide sequence