Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19725

Experiment: Minimal media pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19720 and AO356_19725 are separated by 273 nucleotidesAO356_19725 and AO356_19730 are separated by 70 nucleotidesAO356_19730 and AO356_19735 are separated by 158 nucleotidesAO356_19735 and AO356_19740 overlap by 4 nucleotides AO356_19720: AO356_19720 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,423,750 to 4,425,063 _19720 AO356_19725: AO356_19725 - hypothetical protein, at 4,425,337 to 4,426,074 _19725 AO356_19730: AO356_19730 - hypothetical protein, at 4,426,145 to 4,426,396 _19730 AO356_19735: AO356_19735 - thioesterase, at 4,426,555 to 4,427,031 _19735 AO356_19740: AO356_19740 - thioesterase, at 4,427,028 to 4,427,489 _19740 Position (kb) 4425 4426 4427Strain fitness (log2 ratio) -2 -1 0 1 2at 4424.358 kb on - strand, within AO356_19720at 4424.473 kb on + strand, within AO356_19720at 4424.473 kb on + strand, within AO356_19720at 4424.473 kb on + strand, within AO356_19720at 4424.473 kb on + strand, within AO356_19720at 4424.474 kb on - strand, within AO356_19720at 4424.474 kb on - strand, within AO356_19720at 4424.554 kb on + strand, within AO356_19720at 4424.554 kb on + strand, within AO356_19720at 4424.555 kb on - strand, within AO356_19720at 4424.555 kb on - strand, within AO356_19720at 4424.555 kb on - strand, within AO356_19720at 4424.565 kb on + strand, within AO356_19720at 4424.565 kb on + strand, within AO356_19720at 4424.565 kb on + strand, within AO356_19720at 4424.566 kb on - strand, within AO356_19720at 4424.566 kb on - strand, within AO356_19720at 4424.566 kb on - strand, within AO356_19720at 4424.566 kb on - strand, within AO356_19720at 4424.566 kb on - strand, within AO356_19720at 4424.566 kb on - strand, within AO356_19720at 4424.566 kb on - strand, within AO356_19720at 4424.566 kb on - strand, within AO356_19720at 4424.659 kb on + strand, within AO356_19720at 4424.686 kb on + strand, within AO356_19720at 4424.687 kb on - strand, within AO356_19720at 4424.788 kb on + strand, within AO356_19720at 4424.789 kb on - strand, within AO356_19720at 4425.062 kb on - strandat 4425.089 kb on - strandat 4425.158 kb on + strandat 4425.159 kb on - strandat 4425.301 kb on + strandat 4425.301 kb on + strandat 4425.302 kb on - strandat 4425.302 kb on - strandat 4425.302 kb on - strandat 4425.406 kb on + strandat 4425.406 kb on + strandat 4425.718 kb on + strand, within AO356_19725at 4425.718 kb on + strand, within AO356_19725at 4425.718 kb on + strand, within AO356_19725at 4425.719 kb on - strand, within AO356_19725at 4425.754 kb on + strand, within AO356_19725at 4425.755 kb on - strand, within AO356_19725at 4425.755 kb on - strand, within AO356_19725at 4425.898 kb on + strand, within AO356_19725at 4425.898 kb on + strand, within AO356_19725at 4425.898 kb on + strand, within AO356_19725at 4425.898 kb on + strand, within AO356_19725at 4425.898 kb on + strand, within AO356_19725at 4425.901 kb on + strand, within AO356_19725at 4425.902 kb on - strand, within AO356_19725at 4425.983 kb on - strand, within AO356_19725at 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.024 kb on + strandat 4426.025 kb on - strandat 4426.025 kb on - strandat 4426.025 kb on - strandat 4426.025 kb on - strandat 4426.025 kb on - strandat 4426.025 kb on - strandat 4426.025 kb on - strandat 4426.025 kb on - strandat 4426.025 kb on - strandat 4426.129 kb on + strandat 4426.130 kb on - strandat 4426.135 kb on + strandat 4426.135 kb on + strandat 4426.136 kb on - strandat 4426.143 kb on + strandat 4426.156 kb on + strandat 4426.157 kb on - strandat 4426.157 kb on - strandat 4426.255 kb on + strand, within AO356_19730at 4426.390 kb on + strandat 4426.391 kb on - strandat 4426.411 kb on + strandat 4426.420 kb on - strandat 4426.423 kb on + strandat 4426.423 kb on + strandat 4426.423 kb on + strandat 4426.423 kb on + strandat 4426.424 kb on - strandat 4426.424 kb on - strandat 4426.424 kb on - strandat 4426.469 kb on + strandat 4426.469 kb on + strandat 4426.470 kb on - strandat 4426.475 kb on + strandat 4426.475 kb on + strandat 4426.475 kb on + strandat 4426.476 kb on - strandat 4426.476 kb on - strandat 4426.476 kb on - strandat 4426.476 kb on - strandat 4426.477 kb on + strandat 4426.477 kb on + strandat 4426.477 kb on + strandat 4426.477 kb on + strandat 4426.477 kb on + strandat 4426.477 kb on + strandat 4426.478 kb on - strandat 4426.478 kb on - strandat 4426.479 kb on + strandat 4426.479 kb on + strandat 4426.480 kb on - strandat 4426.534 kb on + strandat 4426.534 kb on + strandat 4426.534 kb on + strandat 4426.535 kb on - strandat 4426.800 kb on + strand, within AO356_19735at 4426.822 kb on + strand, within AO356_19735at 4426.822 kb on + strand, within AO356_19735at 4426.822 kb on + strand, within AO356_19735at 4426.822 kb on + strand, within AO356_19735at 4426.822 kb on + strand, within AO356_19735at 4426.822 kb on + strand, within AO356_19735at 4426.823 kb on - strand, within AO356_19735at 4426.823 kb on - strand, within AO356_19735at 4426.856 kb on - strand, within AO356_19735at 4426.856 kb on - strand, within AO356_19735at 4426.916 kb on - strand, within AO356_19735

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH8
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4,424,358 - AO356_19720 0.46 -0.1
4,424,473 + AO356_19720 0.55 +0.2
4,424,473 + AO356_19720 0.55 +1.0
4,424,473 + AO356_19720 0.55 +1.4
4,424,473 + AO356_19720 0.55 -0.0
4,424,474 - AO356_19720 0.55 +0.0
4,424,474 - AO356_19720 0.55 +0.3
4,424,554 + AO356_19720 0.61 +0.4
4,424,554 + AO356_19720 0.61 +0.6
4,424,555 - AO356_19720 0.61 +0.4
4,424,555 - AO356_19720 0.61 -0.4
4,424,555 - AO356_19720 0.61 +0.1
4,424,565 + AO356_19720 0.62 +0.6
4,424,565 + AO356_19720 0.62 -0.1
4,424,565 + AO356_19720 0.62 +1.0
4,424,566 - AO356_19720 0.62 +0.4
4,424,566 - AO356_19720 0.62 +1.1
4,424,566 - AO356_19720 0.62 -0.9
4,424,566 - AO356_19720 0.62 +1.1
4,424,566 - AO356_19720 0.62 +0.8
4,424,566 - AO356_19720 0.62 -0.1
4,424,566 - AO356_19720 0.62 +0.5
4,424,566 - AO356_19720 0.62 +1.0
4,424,659 + AO356_19720 0.69 -0.5
4,424,686 + AO356_19720 0.71 +1.0
4,424,687 - AO356_19720 0.71 +0.9
4,424,788 + AO356_19720 0.79 +0.1
4,424,789 - AO356_19720 0.79 +0.7
4,425,062 - -0.3
4,425,089 - +0.7
4,425,158 + +1.2
4,425,159 - -0.7
4,425,301 + +0.2
4,425,301 + -1.6
4,425,302 - -0.0
4,425,302 - -0.1
4,425,302 - -0.2
4,425,406 + -0.6
4,425,406 + -2.1
4,425,718 + AO356_19725 0.52 +0.7
4,425,718 + AO356_19725 0.52 +1.1
4,425,718 + AO356_19725 0.52 +1.5
4,425,719 - AO356_19725 0.52 +1.5
4,425,754 + AO356_19725 0.57 -0.5
4,425,755 - AO356_19725 0.57 +1.5
4,425,755 - AO356_19725 0.57 +0.5
4,425,898 + AO356_19725 0.76 +0.4
4,425,898 + AO356_19725 0.76 +0.4
4,425,898 + AO356_19725 0.76 +0.7
4,425,898 + AO356_19725 0.76 +0.4
4,425,898 + AO356_19725 0.76 +0.5
4,425,901 + AO356_19725 0.76 +0.0
4,425,902 - AO356_19725 0.77 +0.8
4,425,983 - AO356_19725 0.88 -0.6
4,426,024 + +0.1
4,426,024 + +0.1
4,426,024 + +0.2
4,426,024 + +0.9
4,426,024 + +0.8
4,426,024 + -0.4
4,426,024 + +1.3
4,426,024 + +0.3
4,426,024 + +0.6
4,426,024 + -0.1
4,426,025 - +1.0
4,426,025 - +0.0
4,426,025 - +0.9
4,426,025 - -0.2
4,426,025 - +0.4
4,426,025 - +1.5
4,426,025 - +0.6
4,426,025 - +0.0
4,426,025 - +1.1
4,426,129 + +1.8
4,426,130 - +0.1
4,426,135 + -1.0
4,426,135 + -1.6
4,426,136 - -0.5
4,426,143 + -0.1
4,426,156 + +0.1
4,426,157 - +0.5
4,426,157 - -0.3
4,426,255 + AO356_19730 0.44 -0.1
4,426,390 + +0.2
4,426,391 - +0.4
4,426,411 + +0.1
4,426,420 - +0.4
4,426,423 + +0.3
4,426,423 + +0.1
4,426,423 + +0.9
4,426,423 + +0.2
4,426,424 - +0.4
4,426,424 - +0.5
4,426,424 - +0.8
4,426,469 + -0.1
4,426,469 + +0.9
4,426,470 - +0.4
4,426,475 + +0.5
4,426,475 + -0.0
4,426,475 + -1.1
4,426,476 - -0.3
4,426,476 - -0.4
4,426,476 - +0.6
4,426,476 - +0.1
4,426,477 + -0.9
4,426,477 + -0.7
4,426,477 + +0.3
4,426,477 + +0.4
4,426,477 + -1.1
4,426,477 + -0.1
4,426,478 - -0.8
4,426,478 - -0.1
4,426,479 + +0.6
4,426,479 + -0.7
4,426,480 - +0.8
4,426,534 + -0.5
4,426,534 + -0.4
4,426,534 + +1.0
4,426,535 - +0.0
4,426,800 + AO356_19735 0.51 +0.3
4,426,822 + AO356_19735 0.56 +0.5
4,426,822 + AO356_19735 0.56 +0.1
4,426,822 + AO356_19735 0.56 -0.1
4,426,822 + AO356_19735 0.56 +1.4
4,426,822 + AO356_19735 0.56 -0.5
4,426,822 + AO356_19735 0.56 +0.0
4,426,823 - AO356_19735 0.56 -0.6
4,426,823 - AO356_19735 0.56 -0.3
4,426,856 - AO356_19735 0.63 +1.0
4,426,856 - AO356_19735 0.63 +0.9
4,426,916 - AO356_19735 0.76 +0.4

Or see this region's nucleotide sequence