Experiment: Minimal media pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00325 and AO356_00330 are separated by 1 nucleotides
AO356_00325: AO356_00325 - RNA helicase, at 60,949 to 63,414
_00325
AO356_00330: AO356_00330 - hypothetical protein, at 63,416 to 64,216
_00330
Position (kb) 63
64
65 Strain fitness (log2 ratio) -1
0
1
2 at 62.420 kb on + strand, within AO356_00325 at 62.420 kb on + strand, within AO356_00325 at 62.420 kb on + strand, within AO356_00325 at 62.462 kb on + strand, within AO356_00325 at 62.462 kb on + strand, within AO356_00325 at 62.462 kb on + strand, within AO356_00325 at 62.463 kb on - strand, within AO356_00325 at 62.463 kb on - strand, within AO356_00325 at 62.496 kb on + strand, within AO356_00325 at 62.511 kb on - strand, within AO356_00325 at 62.511 kb on - strand, within AO356_00325 at 62.531 kb on + strand, within AO356_00325 at 62.531 kb on + strand, within AO356_00325 at 62.531 kb on + strand, within AO356_00325 at 62.531 kb on + strand, within AO356_00325 at 62.532 kb on - strand, within AO356_00325 at 62.532 kb on - strand, within AO356_00325 at 62.600 kb on - strand, within AO356_00325 at 62.637 kb on + strand, within AO356_00325 at 62.638 kb on - strand, within AO356_00325 at 62.728 kb on - strand, within AO356_00325 at 62.816 kb on + strand, within AO356_00325 at 62.816 kb on + strand, within AO356_00325 at 62.816 kb on + strand, within AO356_00325 at 62.901 kb on + strand, within AO356_00325 at 62.901 kb on + strand, within AO356_00325 at 62.902 kb on - strand, within AO356_00325 at 62.902 kb on - strand, within AO356_00325 at 62.902 kb on - strand, within AO356_00325 at 62.902 kb on - strand, within AO356_00325 at 62.971 kb on - strand, within AO356_00325 at 63.006 kb on + strand, within AO356_00325 at 63.006 kb on + strand, within AO356_00325 at 63.006 kb on + strand, within AO356_00325 at 63.006 kb on + strand, within AO356_00325 at 63.006 kb on + strand, within AO356_00325 at 63.007 kb on - strand, within AO356_00325 at 63.007 kb on - strand, within AO356_00325 at 63.089 kb on + strand, within AO356_00325 at 63.090 kb on - strand, within AO356_00325 at 63.090 kb on - strand, within AO356_00325 at 63.147 kb on - strand, within AO356_00325 at 63.158 kb on - strand, within AO356_00325 at 63.193 kb on + strand at 63.193 kb on + strand at 63.194 kb on - strand at 63.200 kb on + strand at 63.213 kb on - strand at 63.233 kb on + strand at 63.286 kb on - strand at 63.363 kb on - strand at 63.399 kb on + strand at 63.399 kb on + strand at 63.418 kb on - strand at 63.418 kb on - strand at 63.418 kb on - strand at 63.513 kb on - strand, within AO356_00330 at 63.541 kb on + strand, within AO356_00330 at 63.541 kb on + strand, within AO356_00330 at 63.679 kb on + strand, within AO356_00330 at 63.679 kb on + strand, within AO356_00330 at 63.680 kb on - strand, within AO356_00330 at 63.680 kb on - strand, within AO356_00330 at 63.680 kb on - strand, within AO356_00330 at 63.680 kb on - strand, within AO356_00330 at 63.680 kb on - strand, within AO356_00330 at 63.877 kb on - strand, within AO356_00330 at 63.877 kb on - strand, within AO356_00330 at 63.877 kb on - strand, within AO356_00330 at 63.878 kb on + strand, within AO356_00330 at 63.879 kb on - strand, within AO356_00330 at 63.879 kb on - strand, within AO356_00330 at 63.879 kb on - strand, within AO356_00330 at 63.919 kb on + strand, within AO356_00330 at 63.998 kb on - strand, within AO356_00330 at 63.998 kb on - strand, within AO356_00330 at 64.030 kb on - strand, within AO356_00330 at 64.065 kb on + strand, within AO356_00330 at 64.066 kb on - strand, within AO356_00330 at 64.066 kb on - strand, within AO356_00330 at 64.071 kb on + strand, within AO356_00330 at 64.071 kb on + strand, within AO356_00330 at 64.071 kb on + strand, within AO356_00330 at 64.145 kb on - strand at 64.145 kb on - strand at 64.182 kb on + strand at 64.182 kb on + strand at 64.182 kb on + strand at 64.190 kb on + strand at 64.191 kb on - strand at 64.217 kb on - strand at 64.235 kb on + strand at 64.235 kb on + strand at 64.235 kb on + strand at 64.236 kb on - strand at 64.335 kb on - strand at 64.335 kb on - strand at 64.382 kb on - strand at 64.420 kb on - strand at 64.420 kb on - strand at 64.420 kb on - strand at 64.420 kb on - strand at 64.460 kb on + strand at 64.464 kb on + strand at 64.479 kb on - strand at 64.479 kb on - strand at 64.505 kb on + strand at 64.506 kb on - strand at 64.506 kb on - strand at 64.517 kb on + strand at 64.518 kb on - strand at 64.518 kb on - strand at 64.518 kb on - strand at 64.589 kb on + strand at 64.590 kb on - strand at 64.590 kb on - strand at 64.597 kb on - strand at 64.711 kb on + strand at 64.711 kb on + strand at 64.712 kb on - strand at 64.712 kb on - strand at 64.712 kb on - strand at 64.740 kb on + strand at 64.741 kb on - strand at 64.755 kb on + strand at 64.755 kb on + strand at 64.756 kb on - strand at 64.756 kb on - strand at 64.816 kb on - strand at 64.816 kb on - strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.830 kb on + strand at 64.831 kb on - strand at 64.831 kb on - strand at 64.831 kb on - strand at 64.831 kb on - strand at 64.836 kb on + strand at 64.837 kb on - strand at 64.837 kb on - strand at 64.837 kb on - strand at 64.843 kb on + strand at 64.844 kb on - strand at 64.844 kb on - strand at 64.949 kb on - strand at 64.989 kb on + strand at 64.989 kb on + strand at 64.989 kb on + strand at 65.008 kb on + strand at 65.009 kb on - strand at 65.023 kb on - strand at 65.048 kb on + strand at 65.048 kb on + strand at 65.048 kb on + strand at 65.049 kb on - strand at 65.049 kb on - strand at 65.137 kb on + strand at 65.150 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH8 remove 62,420 + AO356_00325 0.60 -1.0 62,420 + AO356_00325 0.60 +0.6 62,420 + AO356_00325 0.60 +1.1 62,462 + AO356_00325 0.61 +0.2 62,462 + AO356_00325 0.61 +0.0 62,462 + AO356_00325 0.61 -0.1 62,463 - AO356_00325 0.61 +0.3 62,463 - AO356_00325 0.61 +0.7 62,496 + AO356_00325 0.63 -0.2 62,511 - AO356_00325 0.63 -0.2 62,511 - AO356_00325 0.63 +0.9 62,531 + AO356_00325 0.64 +1.5 62,531 + AO356_00325 0.64 -0.6 62,531 + AO356_00325 0.64 -0.8 62,531 + AO356_00325 0.64 -0.4 62,532 - AO356_00325 0.64 +0.8 62,532 - AO356_00325 0.64 -0.6 62,600 - AO356_00325 0.67 +1.1 62,637 + AO356_00325 0.68 -0.2 62,638 - AO356_00325 0.68 +0.8 62,728 - AO356_00325 0.72 +0.6 62,816 + AO356_00325 0.76 +0.0 62,816 + AO356_00325 0.76 +0.6 62,816 + AO356_00325 0.76 +0.3 62,901 + AO356_00325 0.79 +1.3 62,901 + AO356_00325 0.79 +0.2 62,902 - AO356_00325 0.79 +0.2 62,902 - AO356_00325 0.79 +0.0 62,902 - AO356_00325 0.79 +0.8 62,902 - AO356_00325 0.79 -0.5 62,971 - AO356_00325 0.82 +1.0 63,006 + AO356_00325 0.83 +0.3 63,006 + AO356_00325 0.83 +0.7 63,006 + AO356_00325 0.83 +0.4 63,006 + AO356_00325 0.83 +0.4 63,006 + AO356_00325 0.83 +0.1 63,007 - AO356_00325 0.83 +0.2 63,007 - AO356_00325 0.83 +0.6 63,089 + AO356_00325 0.87 +0.1 63,090 - AO356_00325 0.87 +0.4 63,090 - AO356_00325 0.87 -0.2 63,147 - AO356_00325 0.89 -1.1 63,158 - AO356_00325 0.90 +0.6 63,193 + +0.3 63,193 + -0.1 63,194 - +0.2 63,200 + -0.4 63,213 - +0.1 63,233 + +0.1 63,286 - +0.1 63,363 - +0.0 63,399 + +0.1 63,399 + -0.3 63,418 - +0.7 63,418 - +0.3 63,418 - -0.0 63,513 - AO356_00330 0.12 +1.0 63,541 + AO356_00330 0.16 -0.4 63,541 + AO356_00330 0.16 +0.0 63,679 + AO356_00330 0.33 +0.8 63,679 + AO356_00330 0.33 +0.6 63,680 - AO356_00330 0.33 +0.5 63,680 - AO356_00330 0.33 +0.2 63,680 - AO356_00330 0.33 -1.6 63,680 - AO356_00330 0.33 +0.8 63,680 - AO356_00330 0.33 +0.4 63,877 - AO356_00330 0.58 +0.6 63,877 - AO356_00330 0.58 +1.3 63,877 - AO356_00330 0.58 -0.7 63,878 + AO356_00330 0.58 -0.3 63,879 - AO356_00330 0.58 -0.6 63,879 - AO356_00330 0.58 -0.2 63,879 - AO356_00330 0.58 -1.4 63,919 + AO356_00330 0.63 +0.4 63,998 - AO356_00330 0.73 +0.9 63,998 - AO356_00330 0.73 -0.3 64,030 - AO356_00330 0.77 -1.4 64,065 + AO356_00330 0.81 -0.2 64,066 - AO356_00330 0.81 +0.4 64,066 - AO356_00330 0.81 +0.4 64,071 + AO356_00330 0.82 +0.8 64,071 + AO356_00330 0.82 +1.6 64,071 + AO356_00330 0.82 -0.2 64,145 - +0.3 64,145 - +1.4 64,182 + +0.7 64,182 + -0.2 64,182 + +0.7 64,190 + +0.6 64,191 - -0.9 64,217 - -1.4 64,235 + +0.9 64,235 + +0.0 64,235 + -0.1 64,236 - -0.4 64,335 - -0.0 64,335 - -0.3 64,382 - +1.1 64,420 - +1.0 64,420 - -0.4 64,420 - +0.6 64,420 - +0.6 64,460 + +0.0 64,464 + -0.3 64,479 - +0.3 64,479 - -1.2 64,505 + -0.4 64,506 - -1.1 64,506 - -1.0 64,517 + +0.4 64,518 - +0.3 64,518 - +0.5 64,518 - -0.1 64,589 + +0.1 64,590 - +0.8 64,590 - +0.8 64,597 - -1.2 64,711 + +0.9 64,711 + +0.5 64,712 - -0.2 64,712 - -0.5 64,712 - +0.2 64,740 + +0.0 64,741 - +0.9 64,755 + -0.6 64,755 + -0.3 64,756 - +1.6 64,756 - -1.0 64,816 - +0.1 64,816 - -0.7 64,830 + -0.4 64,830 + -0.1 64,830 + -0.1 64,830 + +0.2 64,830 + -0.4 64,830 + +0.5 64,830 + +0.5 64,830 + +0.0 64,831 - -1.4 64,831 - -0.3 64,831 - +1.7 64,831 - -0.5 64,836 + +0.4 64,837 - +0.8 64,837 - +0.1 64,837 - +0.6 64,843 + +0.1 64,844 - +0.1 64,844 - -0.1 64,949 - -1.4 64,989 + +0.6 64,989 + +0.2 64,989 + -0.7 65,008 + +0.9 65,009 - +1.0 65,023 - +1.8 65,048 + +0.5 65,048 + +0.1 65,048 + -0.3 65,049 - -0.8 65,049 - +1.1 65,137 + +0.8 65,150 - +0.5
Or see this region's nucleotide sequence