Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23035

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23025 and ABZR87_RS23030 are separated by 39 nucleotidesABZR87_RS23030 and ABZR87_RS23035 overlap by 17 nucleotidesABZR87_RS23035 and ABZR87_RS23040 overlap by 4 nucleotides ABZR87_RS23025: ABZR87_RS23025 - UDP-glucuronic acid decarboxylase family protein, at 1,525,732 to 1,526,754 _RS23025 ABZR87_RS23030: ABZR87_RS23030 - glycosyltransferase, at 1,526,794 to 1,527,717 _RS23030 ABZR87_RS23035: ABZR87_RS23035 - PIG-L family deacetylase, at 1,527,701 to 1,528,423 _RS23035 ABZR87_RS23040: ABZR87_RS23040 - zinc-dependent alcohol dehydrogenase, at 1,528,420 to 1,529,691 _RS23040 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -2 -1 0 1 2at 1526.708 kb on - strandat 1526.708 kb on - strandat 1526.868 kb on + strandat 1526.869 kb on - strandat 1526.883 kb on + strandat 1527.113 kb on + strand, within ABZR87_RS23030at 1527.113 kb on + strand, within ABZR87_RS23030at 1527.114 kb on - strand, within ABZR87_RS23030at 1527.191 kb on + strand, within ABZR87_RS23030at 1527.208 kb on - strand, within ABZR87_RS23030at 1527.391 kb on + strand, within ABZR87_RS23030at 1527.392 kb on - strand, within ABZR87_RS23030at 1527.392 kb on - strand, within ABZR87_RS23030at 1527.449 kb on + strand, within ABZR87_RS23030at 1527.449 kb on + strand, within ABZR87_RS23030at 1527.450 kb on - strand, within ABZR87_RS23030at 1527.498 kb on - strand, within ABZR87_RS23030at 1527.656 kb on + strandat 1527.656 kb on + strandat 1527.656 kb on + strandat 1527.656 kb on + strandat 1527.656 kb on + strandat 1527.657 kb on - strandat 1527.817 kb on - strand, within ABZR87_RS23035at 1527.943 kb on - strand, within ABZR87_RS23035at 1528.090 kb on - strand, within ABZR87_RS23035at 1528.614 kb on - strand, within ABZR87_RS23040at 1528.702 kb on + strand, within ABZR87_RS23040at 1528.702 kb on + strand, within ABZR87_RS23040at 1528.703 kb on - strand, within ABZR87_RS23040at 1528.703 kb on - strand, within ABZR87_RS23040at 1528.703 kb on - strand, within ABZR87_RS23040at 1529.189 kb on + strand, within ABZR87_RS23040at 1529.189 kb on + strand, within ABZR87_RS23040at 1529.394 kb on - strand, within ABZR87_RS23040at 1529.408 kb on + strand, within ABZR87_RS23040at 1529.408 kb on + strand, within ABZR87_RS23040

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,526,708 - +0.9
1,526,708 - -1.8
1,526,868 + -0.2
1,526,869 - +0.3
1,526,883 + -0.1
1,527,113 + ABZR87_RS23030 0.35 -0.0
1,527,113 + ABZR87_RS23030 0.35 -0.2
1,527,114 - ABZR87_RS23030 0.35 -0.0
1,527,191 + ABZR87_RS23030 0.43 -1.0
1,527,208 - ABZR87_RS23030 0.45 +0.5
1,527,391 + ABZR87_RS23030 0.65 -0.6
1,527,392 - ABZR87_RS23030 0.65 -0.4
1,527,392 - ABZR87_RS23030 0.65 +0.4
1,527,449 + ABZR87_RS23030 0.71 -0.5
1,527,449 + ABZR87_RS23030 0.71 -0.4
1,527,450 - ABZR87_RS23030 0.71 -0.3
1,527,498 - ABZR87_RS23030 0.76 -0.7
1,527,656 + -0.5
1,527,656 + -0.3
1,527,656 + +0.7
1,527,656 + +1.0
1,527,656 + -0.1
1,527,657 - -1.5
1,527,817 - ABZR87_RS23035 0.16 -2.6
1,527,943 - ABZR87_RS23035 0.33 +0.0
1,528,090 - ABZR87_RS23035 0.54 -1.0
1,528,614 - ABZR87_RS23040 0.15 +0.5
1,528,702 + ABZR87_RS23040 0.22 +0.6
1,528,702 + ABZR87_RS23040 0.22 +2.0
1,528,703 - ABZR87_RS23040 0.22 -0.3
1,528,703 - ABZR87_RS23040 0.22 -0.2
1,528,703 - ABZR87_RS23040 0.22 -0.1
1,529,189 + ABZR87_RS23040 0.60 -1.7
1,529,189 + ABZR87_RS23040 0.60 +1.5
1,529,394 - ABZR87_RS23040 0.77 +0.2
1,529,408 + ABZR87_RS23040 0.78 -0.3
1,529,408 + ABZR87_RS23040 0.78 -0.9

Or see this region's nucleotide sequence