Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22610

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22605 and ABZR87_RS22610 are separated by 36 nucleotidesABZR87_RS22610 and ABZR87_RS22615 are separated by 11 nucleotidesABZR87_RS22615 and ABZR87_RS22620 are separated by 127 nucleotides ABZR87_RS22605: ABZR87_RS22605 - NAD-glutamate dehydrogenase, at 1,427,370 to 1,432,304 _RS22605 ABZR87_RS22610: ABZR87_RS22610 - phosphatidylserine decarboxylase family protein, at 1,432,341 to 1,433,591 _RS22610 ABZR87_RS22615: ABZR87_RS22615 - hypothetical protein, at 1,433,603 to 1,434,178 _RS22615 ABZR87_RS22620: ABZR87_RS22620 - UdgX family uracil-DNA binding protein, at 1,434,306 to 1,434,938 _RS22620 Position (kb) 1432 1433 1434Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 1431.342 kb on + strand, within ABZR87_RS22605at 1431.342 kb on + strand, within ABZR87_RS22605at 1431.342 kb on + strand, within ABZR87_RS22605at 1431.342 kb on + strand, within ABZR87_RS22605at 1431.405 kb on + strand, within ABZR87_RS22605at 1431.406 kb on - strand, within ABZR87_RS22605at 1431.601 kb on - strand, within ABZR87_RS22605at 1431.848 kb on + strandat 1431.981 kb on + strandat 1432.209 kb on + strandat 1432.209 kb on + strandat 1432.305 kb on + strandat 1432.306 kb on - strandat 1432.418 kb on + strandat 1432.419 kb on - strandat 1432.419 kb on - strandat 1432.450 kb on + strandat 1432.450 kb on + strandat 1432.450 kb on + strandat 1432.450 kb on + strandat 1432.451 kb on - strandat 1432.451 kb on - strandat 1432.451 kb on - strandat 1432.572 kb on - strand, within ABZR87_RS22610at 1432.633 kb on + strand, within ABZR87_RS22610at 1432.634 kb on - strand, within ABZR87_RS22610at 1432.634 kb on - strand, within ABZR87_RS22610at 1432.690 kb on + strand, within ABZR87_RS22610at 1432.690 kb on + strand, within ABZR87_RS22610at 1432.690 kb on + strand, within ABZR87_RS22610at 1432.691 kb on - strand, within ABZR87_RS22610at 1432.691 kb on - strand, within ABZR87_RS22610at 1432.691 kb on - strand, within ABZR87_RS22610at 1432.691 kb on - strand, within ABZR87_RS22610at 1432.693 kb on + strand, within ABZR87_RS22610at 1432.693 kb on + strand, within ABZR87_RS22610at 1432.693 kb on + strand, within ABZR87_RS22610at 1432.694 kb on - strand, within ABZR87_RS22610at 1432.694 kb on - strand, within ABZR87_RS22610at 1432.694 kb on - strand, within ABZR87_RS22610at 1432.694 kb on - strand, within ABZR87_RS22610at 1432.694 kb on - strand, within ABZR87_RS22610at 1432.698 kb on - strand, within ABZR87_RS22610at 1432.698 kb on - strand, within ABZR87_RS22610at 1432.708 kb on + strand, within ABZR87_RS22610at 1432.709 kb on - strand, within ABZR87_RS22610at 1432.709 kb on - strand, within ABZR87_RS22610at 1432.711 kb on + strand, within ABZR87_RS22610at 1432.711 kb on + strand, within ABZR87_RS22610at 1432.711 kb on + strand, within ABZR87_RS22610at 1432.711 kb on + strand, within ABZR87_RS22610at 1432.711 kb on + strand, within ABZR87_RS22610at 1432.711 kb on + strand, within ABZR87_RS22610at 1432.712 kb on - strand, within ABZR87_RS22610at 1432.712 kb on - strand, within ABZR87_RS22610at 1432.712 kb on - strand, within ABZR87_RS22610at 1432.756 kb on + strand, within ABZR87_RS22610at 1432.756 kb on + strand, within ABZR87_RS22610at 1432.756 kb on + strand, within ABZR87_RS22610at 1432.756 kb on + strand, within ABZR87_RS22610at 1432.756 kb on + strand, within ABZR87_RS22610at 1432.757 kb on - strand, within ABZR87_RS22610at 1432.757 kb on - strand, within ABZR87_RS22610at 1432.757 kb on - strand, within ABZR87_RS22610at 1432.762 kb on + strand, within ABZR87_RS22610at 1432.762 kb on + strand, within ABZR87_RS22610at 1432.763 kb on - strand, within ABZR87_RS22610at 1432.763 kb on - strand, within ABZR87_RS22610at 1432.763 kb on - strand, within ABZR87_RS22610at 1432.783 kb on + strand, within ABZR87_RS22610at 1432.784 kb on - strand, within ABZR87_RS22610at 1432.784 kb on - strand, within ABZR87_RS22610at 1432.852 kb on + strand, within ABZR87_RS22610at 1432.852 kb on + strand, within ABZR87_RS22610at 1432.853 kb on - strand, within ABZR87_RS22610at 1432.853 kb on - strand, within ABZR87_RS22610at 1432.885 kb on + strand, within ABZR87_RS22610at 1432.885 kb on + strand, within ABZR87_RS22610at 1432.886 kb on - strand, within ABZR87_RS22610at 1432.886 kb on - strand, within ABZR87_RS22610at 1433.015 kb on + strand, within ABZR87_RS22610at 1433.027 kb on - strand, within ABZR87_RS22610at 1433.119 kb on + strand, within ABZR87_RS22610at 1433.120 kb on - strand, within ABZR87_RS22610at 1433.344 kb on + strand, within ABZR87_RS22610at 1433.345 kb on - strand, within ABZR87_RS22610at 1433.357 kb on - strand, within ABZR87_RS22610at 1433.604 kb on + strandat 1433.677 kb on - strand, within ABZR87_RS22615at 1433.677 kb on - strand, within ABZR87_RS22615at 1433.724 kb on + strand, within ABZR87_RS22615at 1433.725 kb on - strand, within ABZR87_RS22615at 1433.725 kb on - strand, within ABZR87_RS22615at 1433.952 kb on + strand, within ABZR87_RS22615at 1433.953 kb on - strand, within ABZR87_RS22615at 1434.148 kb on - strandat 1434.148 kb on - strandat 1434.148 kb on - strandat 1434.148 kb on - strandat 1434.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,431,342 + ABZR87_RS22605 0.80 +1.5
1,431,342 + ABZR87_RS22605 0.80 -0.9
1,431,342 + ABZR87_RS22605 0.80 -0.5
1,431,342 + ABZR87_RS22605 0.80 +2.0
1,431,405 + ABZR87_RS22605 0.82 -1.4
1,431,406 - ABZR87_RS22605 0.82 +1.5
1,431,601 - ABZR87_RS22605 0.86 -0.0
1,431,848 + +1.7
1,431,981 + +5.8
1,432,209 + -0.3
1,432,209 + -0.3
1,432,305 + +0.6
1,432,306 - -0.1
1,432,418 + +0.2
1,432,419 - -0.4
1,432,419 - -1.2
1,432,450 + +0.2
1,432,450 + -1.1
1,432,450 + -0.1
1,432,450 + -3.8
1,432,451 - -0.7
1,432,451 - -1.2
1,432,451 - +0.9
1,432,572 - ABZR87_RS22610 0.18 -0.0
1,432,633 + ABZR87_RS22610 0.23 -0.6
1,432,634 - ABZR87_RS22610 0.23 -0.4
1,432,634 - ABZR87_RS22610 0.23 -0.6
1,432,690 + ABZR87_RS22610 0.28 +1.2
1,432,690 + ABZR87_RS22610 0.28 -1.0
1,432,690 + ABZR87_RS22610 0.28 -1.8
1,432,691 - ABZR87_RS22610 0.28 -0.6
1,432,691 - ABZR87_RS22610 0.28 +0.9
1,432,691 - ABZR87_RS22610 0.28 -0.4
1,432,691 - ABZR87_RS22610 0.28 +2.5
1,432,693 + ABZR87_RS22610 0.28 -0.1
1,432,693 + ABZR87_RS22610 0.28 +0.1
1,432,693 + ABZR87_RS22610 0.28 +0.5
1,432,694 - ABZR87_RS22610 0.28 +0.5
1,432,694 - ABZR87_RS22610 0.28 -0.2
1,432,694 - ABZR87_RS22610 0.28 +1.6
1,432,694 - ABZR87_RS22610 0.28 +0.5
1,432,694 - ABZR87_RS22610 0.28 -0.2
1,432,698 - ABZR87_RS22610 0.29 -0.0
1,432,698 - ABZR87_RS22610 0.29 +0.7
1,432,708 + ABZR87_RS22610 0.29 +0.2
1,432,709 - ABZR87_RS22610 0.29 +1.6
1,432,709 - ABZR87_RS22610 0.29 +1.2
1,432,711 + ABZR87_RS22610 0.30 -0.0
1,432,711 + ABZR87_RS22610 0.30 -1.0
1,432,711 + ABZR87_RS22610 0.30 +0.6
1,432,711 + ABZR87_RS22610 0.30 -0.8
1,432,711 + ABZR87_RS22610 0.30 +1.0
1,432,711 + ABZR87_RS22610 0.30 +2.5
1,432,712 - ABZR87_RS22610 0.30 -0.0
1,432,712 - ABZR87_RS22610 0.30 -1.8
1,432,712 - ABZR87_RS22610 0.30 -1.6
1,432,756 + ABZR87_RS22610 0.33 -1.3
1,432,756 + ABZR87_RS22610 0.33 -0.5
1,432,756 + ABZR87_RS22610 0.33 -0.2
1,432,756 + ABZR87_RS22610 0.33 -1.7
1,432,756 + ABZR87_RS22610 0.33 +0.6
1,432,757 - ABZR87_RS22610 0.33 -0.9
1,432,757 - ABZR87_RS22610 0.33 -0.1
1,432,757 - ABZR87_RS22610 0.33 +1.2
1,432,762 + ABZR87_RS22610 0.34 +0.7
1,432,762 + ABZR87_RS22610 0.34 +0.3
1,432,763 - ABZR87_RS22610 0.34 +0.1
1,432,763 - ABZR87_RS22610 0.34 +0.5
1,432,763 - ABZR87_RS22610 0.34 +1.2
1,432,783 + ABZR87_RS22610 0.35 -0.9
1,432,784 - ABZR87_RS22610 0.35 +0.2
1,432,784 - ABZR87_RS22610 0.35 -0.4
1,432,852 + ABZR87_RS22610 0.41 -0.4
1,432,852 + ABZR87_RS22610 0.41 -0.4
1,432,853 - ABZR87_RS22610 0.41 -0.6
1,432,853 - ABZR87_RS22610 0.41 -0.3
1,432,885 + ABZR87_RS22610 0.43 +0.6
1,432,885 + ABZR87_RS22610 0.43 -0.2
1,432,886 - ABZR87_RS22610 0.44 -0.6
1,432,886 - ABZR87_RS22610 0.44 -1.0
1,433,015 + ABZR87_RS22610 0.54 +0.8
1,433,027 - ABZR87_RS22610 0.55 +0.5
1,433,119 + ABZR87_RS22610 0.62 -0.9
1,433,120 - ABZR87_RS22610 0.62 +0.9
1,433,344 + ABZR87_RS22610 0.80 -1.5
1,433,345 - ABZR87_RS22610 0.80 -0.9
1,433,357 - ABZR87_RS22610 0.81 +6.5
1,433,604 + -0.8
1,433,677 - ABZR87_RS22615 0.13 -0.6
1,433,677 - ABZR87_RS22615 0.13 -0.4
1,433,724 + ABZR87_RS22615 0.21 -0.8
1,433,725 - ABZR87_RS22615 0.21 -1.1
1,433,725 - ABZR87_RS22615 0.21 -0.3
1,433,952 + ABZR87_RS22615 0.61 -0.1
1,433,953 - ABZR87_RS22615 0.61 -0.8
1,434,148 - -0.3
1,434,148 - +0.4
1,434,148 - +1.8
1,434,148 - +0.3
1,434,157 - -0.1

Or see this region's nucleotide sequence