Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22320

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,365,154	+		ABZR87_RS22315	0.36	-0.0
1,365,262	+		ABZR87_RS22315	0.46	-0.8
1,365,263	+		ABZR87_RS22315	0.47	+0.2
1,365,263	-		ABZR87_RS22315	0.47	+0.6
1,365,263	-		ABZR87_RS22315	0.47	-0.7
1,365,304	+		ABZR87_RS22315	0.50	-1.3
1,365,305	-		ABZR87_RS22315	0.50	-0.7
1,365,305	-		ABZR87_RS22315	0.50	+0.1
1,365,305	-		ABZR87_RS22315	0.50	-1.1
1,365,305	-		ABZR87_RS22315	0.50	-0.8
1,365,305	-		ABZR87_RS22315	0.50	-1.1
1,365,305	-		ABZR87_RS22315	0.50	+1.1
1,365,305	-		ABZR87_RS22315	0.50	-1.2
1,365,305	-		ABZR87_RS22315	0.50	+0.6
1,365,305	-		ABZR87_RS22315	0.50	+1.1
1,365,382	+		ABZR87_RS22315	0.58	+0.4
1,365,382	+		ABZR87_RS22315	0.58	+0.1
1,365,382	+		ABZR87_RS22315	0.58	+0.2
1,365,382	+		ABZR87_RS22315	0.58	-1.9
1,365,382	+		ABZR87_RS22315	0.58	+2.0
1,365,382	+		ABZR87_RS22315	0.58	-1.1
1,365,383	-		ABZR87_RS22315	0.58	-0.3
1,365,412	+		ABZR87_RS22315	0.61	+1.9
1,365,412	+		ABZR87_RS22315	0.61	-1.5
1,365,412	+		ABZR87_RS22315	0.61	-0.0
1,365,412	+		ABZR87_RS22315	0.61	+2.4
1,365,413	-		ABZR87_RS22315	0.61	-0.1
1,365,413	-		ABZR87_RS22315	0.61	+0.1
1,365,413	-		ABZR87_RS22315	0.61	-0.9
1,365,432	-		ABZR87_RS22315	0.62	-0.5
1,365,454	+		ABZR87_RS22315	0.65	+0.1
1,365,454	+		ABZR87_RS22315	0.65	+1.0
1,365,454	+		ABZR87_RS22315	0.65	+1.7
1,365,454	+		ABZR87_RS22315	0.65	+0.8
1,365,454	+		ABZR87_RS22315	0.65	-0.8
1,365,454	+		ABZR87_RS22315	0.65	+0.1
1,365,455	-		ABZR87_RS22315	0.65	-0.1
1,365,455	-		ABZR87_RS22315	0.65	-0.5
1,365,494	+		ABZR87_RS22315	0.68	+0.2
1,365,494	+		ABZR87_RS22315	0.68	-1.6
1,365,494	+		ABZR87_RS22315	0.68	+0.9
1,365,494	+		ABZR87_RS22315	0.68	+0.5
1,365,494	+		ABZR87_RS22315	0.68	+1.1
1,365,495	-		ABZR87_RS22315	0.68	+0.0
1,365,495	-		ABZR87_RS22315	0.68	-0.9
1,365,495	-		ABZR87_RS22315	0.68	-0.2
1,365,521	+		ABZR87_RS22315	0.71	-2.8
1,365,522	-		ABZR87_RS22315	0.71	+0.7
1,365,522	-		ABZR87_RS22315	0.71	+1.1
1,365,522	-		ABZR87_RS22315	0.71	-1.0
1,365,522	-		ABZR87_RS22315	0.71	+0.8
1,365,522	-		ABZR87_RS22315	0.71	+0.4
1,365,646	+		ABZR87_RS22315	0.83	+0.1
1,365,646	+		ABZR87_RS22315	0.83	+0.0
1,365,646	+		ABZR87_RS22315	0.83	-1.4
1,365,646	+		ABZR87_RS22315	0.83	+0.0
1,365,647	-		ABZR87_RS22315	0.83	-0.4
1,365,647	-		ABZR87_RS22315	0.83	-1.4
1,365,647	-		ABZR87_RS22315	0.83	+0.5
1,365,647	-		ABZR87_RS22315	0.83	+2.3
1,365,736	+				-0.0
1,365,736	+				-0.1
1,365,736	+				+0.6
1,365,736	+				-2.6
1,365,737	-				+1.0
1,365,950	-				-0.5
1,365,950	-				+0.8
1,365,950	-				+0.3
1,365,950	-				+0.0
1,366,010	+				+1.0
1,366,010	+				+0.5
1,366,010	+				+0.2
1,366,011	-				-0.2
1,366,011	-				-1.4
1,366,011	-				-1.2
1,366,011	-				+0.6
1,366,011	-				+0.5
1,366,011	-				-0.3
1,366,011	-				-0.8
1,366,019	+				-1.1
1,366,020	-				+0.2
1,366,129	+				-0.9
1,366,129	+				-0.3
1,366,130	-				+1.0
1,366,130	-				-1.6
1,366,130	-				-0.5
1,366,130	-				-0.9
1,366,130	-				+0.5
1,366,131	+				-0.2
1,366,131	+				+0.2
1,366,131	+				-0.2
1,366,155	+				+0.4
1,366,155	+				+2.0
1,366,155	+				-0.5
1,366,155	+				+1.1
1,366,155	+				+0.8
1,366,155	+				-1.0
1,366,156	-				+0.9
1,366,156	-				-0.0
1,366,156	-				+1.7
1,366,156	-				-0.2
1,366,188	+		ABZR87_RS22320	0.13	+0.7
1,366,189	-		ABZR87_RS22320	0.13	+0.2
1,366,189	-		ABZR87_RS22320	0.13	-0.0
1,366,390	+		ABZR87_RS22320	0.41	+0.3
1,366,390	+		ABZR87_RS22320	0.41	-1.8
1,366,391	-		ABZR87_RS22320	0.41	+0.4
1,366,391	-		ABZR87_RS22320	0.41	-0.9
1,366,522	+		ABZR87_RS22320	0.59	+0.2
1,366,522	+		ABZR87_RS22320	0.59	+0.8
1,366,522	+		ABZR87_RS22320	0.59	-1.1
1,366,523	-		ABZR87_RS22320	0.59	-2.3
1,366,523	-		ABZR87_RS22320	0.59	-0.7
1,366,523	-		ABZR87_RS22320	0.59	+0.9
1,366,524	+		ABZR87_RS22320	0.59	+2.1
1,366,524	+		ABZR87_RS22320	0.59	+0.1
1,366,524	+		ABZR87_RS22320	0.59	-0.3
1,366,524	+		ABZR87_RS22320	0.59	+1.1
1,366,524	+		ABZR87_RS22320	0.59	+0.1
1,366,524	+		ABZR87_RS22320	0.59	+0.8
1,366,524	+		ABZR87_RS22320	0.59	+0.8
1,366,524	+		ABZR87_RS22320	0.59	+0.0
1,366,524	+		ABZR87_RS22320	0.59	-0.2
1,366,525	-		ABZR87_RS22320	0.60	-1.5
1,366,539	-		ABZR87_RS22320	0.61	-1.0
1,366,539	-		ABZR87_RS22320	0.61	-0.7
1,366,539	-		ABZR87_RS22320	0.61	+0.2
1,366,542	+		ABZR87_RS22320	0.62	-1.0
1,366,542	+		ABZR87_RS22320	0.62	-1.0
1,366,542	+		ABZR87_RS22320	0.62	+0.4
1,366,542	+		ABZR87_RS22320	0.62	-0.1
1,366,542	+		ABZR87_RS22320	0.62	+0.3
1,366,542	+		ABZR87_RS22320	0.62	-0.8
1,366,542	+		ABZR87_RS22320	0.62	-0.5
1,366,543	-		ABZR87_RS22320	0.62	-1.0
1,366,543	-		ABZR87_RS22320	0.62	-0.1
1,366,543	-		ABZR87_RS22320	0.62	-0.3
1,366,543	-		ABZR87_RS22320	0.62	+0.6
1,366,543	-		ABZR87_RS22320	0.62	-0.5
1,366,543	-		ABZR87_RS22320	0.62	+1.2
1,366,543	-		ABZR87_RS22320	0.62	+0.9
1,366,543	-		ABZR87_RS22320	0.62	-0.8
1,366,543	-		ABZR87_RS22320	0.62	-1.0
1,366,543	-		ABZR87_RS22320	0.62	-0.4
1,366,543	-		ABZR87_RS22320	0.62	-0.2
1,366,575	+		ABZR87_RS22320	0.66	-1.5
1,366,576	-		ABZR87_RS22320	0.67	-1.8
1,366,694	+		ABZR87_RS22320	0.83	+1.1
1,366,695	-		ABZR87_RS22320	0.83	+1.8
1,366,701	+		ABZR87_RS22320	0.84	+0.7
1,366,701	+		ABZR87_RS22320	0.84	+1.4
1,366,701	+		ABZR87_RS22320	0.84	+0.3
1,366,797	+				+0.5
1,366,797	+				+1.1
1,366,797	+				+0.5
1,366,798	-				+0.3
1,366,798	-				-1.2
1,366,798	-				+0.1
1,366,798	-				-0.5
1,366,798	-				+0.1
1,366,798	-				-1.8
1,366,828	+				-1.2
1,366,828	+				+0.5
1,366,828	+				+0.7
1,366,829	-				-0.5
1,366,830	+				+1.9
1,366,830	+				+2.3
1,366,830	+				-0.3
1,366,830	+				+1.1
1,366,830	+				+0.3
1,366,830	+				+1.3
1,366,830	+				-0.8
1,366,831	-				+1.1
1,366,831	-				+0.2
1,366,831	-				+0.5
1,367,017	+		ABZR87_RS22325	0.31	+0.6
1,367,018	-		ABZR87_RS22325	0.32	+0.5
1,367,018	-		ABZR87_RS22325	0.32	-0.2
1,367,098	+		ABZR87_RS22325	0.59	+0.5
1,367,099	-		ABZR87_RS22325	0.59	-0.6
1,367,099	-		ABZR87_RS22325	0.59	-0.5
1,367,206	+				+0.5
1,367,206	+				+2.7
1,367,206	+				+1.3
1,367,206	+				+0.2
1,367,206	+				+1.7
1,367,206	+				-0.1
1,367,206	+				+0.7
1,367,206	+				-3.5
1,367,207	-				+1.3
1,367,207	-				-1.1
1,367,207	-				-0.7
1,367,207	-				+0.1
1,367,207	-				+0.0
1,367,207	-				-0.7
1,367,229	+				+0.9
1,367,266	-				+0.3
1,367,406	+				+2.7
1,367,407	-				+0.5
1,367,411	+				+3.7
1,367,428	+				+1.7
1,367,429	-				+0.8
1,367,438	+				+3.8
1,367,438	+				+2.7
1,367,439	-				+1.1
1,367,439	-				+1.6
1,367,467	+				+1.5
1,367,467	+				+2.3
1,367,467	+				+3.6
1,367,467	+				+2.8
1,367,468	-				+0.5
1,367,468	-				+0.5
1,367,468	-				+0.7
1,367,542	+				+4.7
1,367,542	+				+2.6
1,367,543	-				-0.2
1,367,628	-				+0.7
1,367,628	-				+1.0
1,367,704	+				+2.8
1,367,704	+				+2.1
1,367,705	-				-0.5
1,367,705	-				+0.0
1,367,707	+				+2.7
1,367,707	+				+1.9
1,367,707	+				+2.7
1,367,708	-				-1.0
1,367,708	-				+0.8
1,367,800	+		ABZR87_RS22330	0.34	+3.8
1,367,800	+		ABZR87_RS22330	0.34	+1.5