Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20795

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20790 and ABZR87_RS20795 overlap by 1 nucleotidesABZR87_RS20795 and ABZR87_RS20800 overlap by 4 nucleotides ABZR87_RS20790: ABZR87_RS20790 - RNA ligase RtcB family protein, at 1,051,197 to 1,052,324 _RS20790 ABZR87_RS20795: ABZR87_RS20795 - peptide chain release factor H, at 1,052,324 to 1,052,941 _RS20795 ABZR87_RS20800: ABZR87_RS20800 - aldo/keto reductase, at 1,052,938 to 1,053,990 _RS20800 Position (kb) 1052 1053Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1051.395 kb on + strand, within ABZR87_RS20790at 1051.395 kb on + strand, within ABZR87_RS20790at 1051.638 kb on + strand, within ABZR87_RS20790at 1051.639 kb on - strand, within ABZR87_RS20790at 1051.639 kb on - strand, within ABZR87_RS20790at 1051.789 kb on - strand, within ABZR87_RS20790at 1052.013 kb on + strand, within ABZR87_RS20790at 1052.019 kb on + strand, within ABZR87_RS20790at 1052.020 kb on - strand, within ABZR87_RS20790at 1052.194 kb on - strand, within ABZR87_RS20790at 1052.214 kb on + strandat 1052.299 kb on - strandat 1052.299 kb on - strandat 1052.299 kb on - strandat 1052.299 kb on - strandat 1052.331 kb on + strandat 1052.728 kb on + strand, within ABZR87_RS20795at 1052.729 kb on - strand, within ABZR87_RS20795at 1052.729 kb on - strand, within ABZR87_RS20795at 1052.729 kb on - strand, within ABZR87_RS20795at 1052.812 kb on + strand, within ABZR87_RS20795at 1052.812 kb on + strand, within ABZR87_RS20795at 1052.813 kb on - strand, within ABZR87_RS20795at 1052.940 kb on - strandat 1053.233 kb on + strand, within ABZR87_RS20800at 1053.233 kb on + strand, within ABZR87_RS20800at 1053.233 kb on + strand, within ABZR87_RS20800at 1053.234 kb on - strand, within ABZR87_RS20800at 1053.234 kb on - strand, within ABZR87_RS20800at 1053.234 kb on - strand, within ABZR87_RS20800at 1053.312 kb on - strand, within ABZR87_RS20800at 1053.425 kb on + strand, within ABZR87_RS20800at 1053.425 kb on + strand, within ABZR87_RS20800at 1053.425 kb on + strand, within ABZR87_RS20800at 1053.521 kb on + strand, within ABZR87_RS20800at 1053.522 kb on - strand, within ABZR87_RS20800at 1053.522 kb on - strand, within ABZR87_RS20800at 1053.549 kb on + strand, within ABZR87_RS20800at 1053.550 kb on - strand, within ABZR87_RS20800at 1053.550 kb on - strand, within ABZR87_RS20800at 1053.608 kb on + strand, within ABZR87_RS20800at 1053.619 kb on - strand, within ABZR87_RS20800at 1053.807 kb on - strand, within ABZR87_RS20800at 1053.807 kb on - strand, within ABZR87_RS20800

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,051,395 + ABZR87_RS20790 0.18 +1.8
1,051,395 + ABZR87_RS20790 0.18 +1.0
1,051,638 + ABZR87_RS20790 0.39 -0.9
1,051,639 - ABZR87_RS20790 0.39 +0.0
1,051,639 - ABZR87_RS20790 0.39 +0.9
1,051,789 - ABZR87_RS20790 0.52 +1.5
1,052,013 + ABZR87_RS20790 0.72 +0.8
1,052,019 + ABZR87_RS20790 0.73 -1.0
1,052,020 - ABZR87_RS20790 0.73 +0.3
1,052,194 - ABZR87_RS20790 0.88 +0.2
1,052,214 + +0.6
1,052,299 - -0.8
1,052,299 - +0.7
1,052,299 - -1.2
1,052,299 - -0.8
1,052,331 + +0.1
1,052,728 + ABZR87_RS20795 0.65 +0.1
1,052,729 - ABZR87_RS20795 0.66 -0.1
1,052,729 - ABZR87_RS20795 0.66 +0.8
1,052,729 - ABZR87_RS20795 0.66 +0.6
1,052,812 + ABZR87_RS20795 0.79 +0.8
1,052,812 + ABZR87_RS20795 0.79 -0.2
1,052,813 - ABZR87_RS20795 0.79 +1.3
1,052,940 - +2.8
1,053,233 + ABZR87_RS20800 0.28 +1.1
1,053,233 + ABZR87_RS20800 0.28 -0.5
1,053,233 + ABZR87_RS20800 0.28 +0.8
1,053,234 - ABZR87_RS20800 0.28 +1.8
1,053,234 - ABZR87_RS20800 0.28 -0.9
1,053,234 - ABZR87_RS20800 0.28 +1.4
1,053,312 - ABZR87_RS20800 0.36 -0.8
1,053,425 + ABZR87_RS20800 0.46 -2.0
1,053,425 + ABZR87_RS20800 0.46 -1.3
1,053,425 + ABZR87_RS20800 0.46 -2.8
1,053,521 + ABZR87_RS20800 0.55 +0.1
1,053,522 - ABZR87_RS20800 0.55 -0.0
1,053,522 - ABZR87_RS20800 0.55 -0.4
1,053,549 + ABZR87_RS20800 0.58 +0.5
1,053,550 - ABZR87_RS20800 0.58 -2.6
1,053,550 - ABZR87_RS20800 0.58 -2.2
1,053,608 + ABZR87_RS20800 0.64 +1.9
1,053,619 - ABZR87_RS20800 0.65 +0.7
1,053,807 - ABZR87_RS20800 0.83 +0.0
1,053,807 - ABZR87_RS20800 0.83 +0.2

Or see this region's nucleotide sequence