Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20530

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20520 and ABZR87_RS20525 are separated by 28 nucleotidesABZR87_RS20525 and ABZR87_RS20530 are separated by 145 nucleotidesABZR87_RS20530 and ABZR87_RS20535 are separated by 128 nucleotides ABZR87_RS20520: ABZR87_RS20520 - crotonase/enoyl-CoA hydratase family protein, at 990,451 to 991,272 _RS20520 ABZR87_RS20525: ABZR87_RS20525 - Mpo1-like protein, at 991,301 to 991,834 _RS20525 ABZR87_RS20530: ABZR87_RS20530 - Crp/Fnr family transcriptional regulator, at 991,980 to 992,711 _RS20530 ABZR87_RS20535: ABZR87_RS20535 - elongation factor G, at 992,840 to 994,942 _RS20535 Position (kb) 991 992 993Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 991.271 kb on - strandat 991.283 kb on + strandat 991.283 kb on + strandat 991.476 kb on + strand, within ABZR87_RS20525at 991.476 kb on + strand, within ABZR87_RS20525at 991.476 kb on + strand, within ABZR87_RS20525at 991.477 kb on - strand, within ABZR87_RS20525at 991.477 kb on - strand, within ABZR87_RS20525at 991.479 kb on + strand, within ABZR87_RS20525at 991.479 kb on + strand, within ABZR87_RS20525at 991.479 kb on + strand, within ABZR87_RS20525at 991.526 kb on - strand, within ABZR87_RS20525at 991.638 kb on + strand, within ABZR87_RS20525at 991.638 kb on + strand, within ABZR87_RS20525at 991.638 kb on + strand, within ABZR87_RS20525at 991.638 kb on + strand, within ABZR87_RS20525at 991.639 kb on - strand, within ABZR87_RS20525at 991.639 kb on - strand, within ABZR87_RS20525at 991.775 kb on - strand, within ABZR87_RS20525at 991.775 kb on - strand, within ABZR87_RS20525at 991.803 kb on + strandat 991.804 kb on - strandat 991.804 kb on - strandat 991.804 kb on - strandat 991.888 kb on + strandat 991.888 kb on + strandat 991.889 kb on - strandat 991.889 kb on - strandat 991.889 kb on - strandat 991.904 kb on + strandat 992.026 kb on - strandat 992.166 kb on + strand, within ABZR87_RS20530at 992.272 kb on + strand, within ABZR87_RS20530at 992.273 kb on - strand, within ABZR87_RS20530at 992.318 kb on + strand, within ABZR87_RS20530at 992.333 kb on + strand, within ABZR87_RS20530at 992.333 kb on + strand, within ABZR87_RS20530at 992.333 kb on + strand, within ABZR87_RS20530at 992.333 kb on + strand, within ABZR87_RS20530at 992.334 kb on - strand, within ABZR87_RS20530at 992.488 kb on + strand, within ABZR87_RS20530at 992.488 kb on + strand, within ABZR87_RS20530at 992.488 kb on + strand, within ABZR87_RS20530at 992.488 kb on + strand, within ABZR87_RS20530at 992.489 kb on - strand, within ABZR87_RS20530at 992.489 kb on - strand, within ABZR87_RS20530at 992.489 kb on - strand, within ABZR87_RS20530at 992.489 kb on - strand, within ABZR87_RS20530at 992.489 kb on - strand, within ABZR87_RS20530at 992.691 kb on + strandat 992.691 kb on + strandat 992.692 kb on - strandat 992.692 kb on - strandat 992.724 kb on + strandat 992.725 kb on - strandat 992.725 kb on - strandat 992.730 kb on + strandat 992.730 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.756 kb on + strandat 992.757 kb on - strandat 992.757 kb on - strandat 992.757 kb on - strandat 992.757 kb on - strandat 992.758 kb on + strandat 992.758 kb on + strandat 992.758 kb on + strandat 992.758 kb on + strandat 992.759 kb on - strandat 992.759 kb on - strandat 992.759 kb on - strandat 992.759 kb on - strandat 992.936 kb on + strandat 992.936 kb on + strandat 992.937 kb on - strandat 992.958 kb on + strandat 993.176 kb on + strand, within ABZR87_RS20535at 993.176 kb on + strand, within ABZR87_RS20535at 993.236 kb on + strand, within ABZR87_RS20535at 993.236 kb on + strand, within ABZR87_RS20535at 993.236 kb on + strand, within ABZR87_RS20535at 993.236 kb on + strand, within ABZR87_RS20535at 993.236 kb on + strand, within ABZR87_RS20535at 993.236 kb on + strand, within ABZR87_RS20535at 993.237 kb on - strand, within ABZR87_RS20535at 993.237 kb on - strand, within ABZR87_RS20535at 993.237 kb on - strand, within ABZR87_RS20535at 993.237 kb on - strand, within ABZR87_RS20535at 993.237 kb on - strand, within ABZR87_RS20535at 993.237 kb on - strand, within ABZR87_RS20535at 993.450 kb on - strand, within ABZR87_RS20535at 993.548 kb on + strand, within ABZR87_RS20535at 993.548 kb on + strand, within ABZR87_RS20535at 993.549 kb on - strand, within ABZR87_RS20535at 993.549 kb on - strand, within ABZR87_RS20535at 993.549 kb on - strand, within ABZR87_RS20535at 993.692 kb on + strand, within ABZR87_RS20535at 993.692 kb on + strand, within ABZR87_RS20535at 993.692 kb on + strand, within ABZR87_RS20535at 993.692 kb on + strand, within ABZR87_RS20535at 993.693 kb on - strand, within ABZR87_RS20535at 993.693 kb on - strand, within ABZR87_RS20535at 993.693 kb on - strand, within ABZR87_RS20535

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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991,271 - -0.0
991,283 + +0.2
991,283 + +0.7
991,476 + ABZR87_RS20525 0.33 +0.2
991,476 + ABZR87_RS20525 0.33 +1.0
991,476 + ABZR87_RS20525 0.33 +1.2
991,477 - ABZR87_RS20525 0.33 +0.1
991,477 - ABZR87_RS20525 0.33 +0.5
991,479 + ABZR87_RS20525 0.33 +0.6
991,479 + ABZR87_RS20525 0.33 +2.1
991,479 + ABZR87_RS20525 0.33 +2.5
991,526 - ABZR87_RS20525 0.42 +3.1
991,638 + ABZR87_RS20525 0.63 +1.8
991,638 + ABZR87_RS20525 0.63 -0.3
991,638 + ABZR87_RS20525 0.63 +0.0
991,638 + ABZR87_RS20525 0.63 +0.2
991,639 - ABZR87_RS20525 0.63 +0.1
991,639 - ABZR87_RS20525 0.63 -0.5
991,775 - ABZR87_RS20525 0.89 -0.5
991,775 - ABZR87_RS20525 0.89 +1.5
991,803 + -2.2
991,804 - -0.1
991,804 - -0.3
991,804 - +0.8
991,888 + +2.1
991,888 + +0.3
991,889 - -0.7
991,889 - +1.3
991,889 - -2.3
991,904 + +2.4
992,026 - -0.3
992,166 + ABZR87_RS20530 0.25 +0.0
992,272 + ABZR87_RS20530 0.40 +0.3
992,273 - ABZR87_RS20530 0.40 +1.3
992,318 + ABZR87_RS20530 0.46 +0.1
992,333 + ABZR87_RS20530 0.48 +0.6
992,333 + ABZR87_RS20530 0.48 -0.4
992,333 + ABZR87_RS20530 0.48 +0.6
992,333 + ABZR87_RS20530 0.48 -1.2
992,334 - ABZR87_RS20530 0.48 -0.2
992,488 + ABZR87_RS20530 0.69 -0.1
992,488 + ABZR87_RS20530 0.69 -0.1
992,488 + ABZR87_RS20530 0.69 +2.5
992,488 + ABZR87_RS20530 0.69 -0.7
992,489 - ABZR87_RS20530 0.70 +0.7
992,489 - ABZR87_RS20530 0.70 -1.7
992,489 - ABZR87_RS20530 0.70 +0.5
992,489 - ABZR87_RS20530 0.70 +1.3
992,489 - ABZR87_RS20530 0.70 +2.5
992,691 + -1.9
992,691 + -1.4
992,692 - -0.7
992,692 - +0.0
992,724 + -1.4
992,725 - +0.5
992,725 - +0.6
992,730 + +0.1
992,730 + +0.8
992,756 + -1.1
992,756 + -0.0
992,756 + -1.2
992,756 + -0.2
992,756 + +0.4
992,756 + -0.9
992,756 + +0.1
992,756 + -0.4
992,756 + -0.8
992,756 + -0.9
992,757 - -2.0
992,757 - +0.5
992,757 - -0.0
992,757 - -0.4
992,758 + -1.8
992,758 + +0.8
992,758 + +0.9
992,758 + -0.1
992,759 - +2.8
992,759 - +0.9
992,759 - +0.1
992,759 - -0.1
992,936 + +0.4
992,936 + -2.0
992,937 - -0.2
992,958 + -1.7
993,176 + ABZR87_RS20535 0.16 +0.1
993,176 + ABZR87_RS20535 0.16 -0.5
993,236 + ABZR87_RS20535 0.19 -2.3
993,236 + ABZR87_RS20535 0.19 -1.9
993,236 + ABZR87_RS20535 0.19 -1.0
993,236 + ABZR87_RS20535 0.19 +0.8
993,236 + ABZR87_RS20535 0.19 -0.6
993,236 + ABZR87_RS20535 0.19 -1.5
993,237 - ABZR87_RS20535 0.19 -0.9
993,237 - ABZR87_RS20535 0.19 +1.0
993,237 - ABZR87_RS20535 0.19 -1.9
993,237 - ABZR87_RS20535 0.19 -1.5
993,237 - ABZR87_RS20535 0.19 +0.3
993,237 - ABZR87_RS20535 0.19 -0.3
993,450 - ABZR87_RS20535 0.29 -0.4
993,548 + ABZR87_RS20535 0.34 -0.6
993,548 + ABZR87_RS20535 0.34 +2.8
993,549 - ABZR87_RS20535 0.34 -0.0
993,549 - ABZR87_RS20535 0.34 -0.2
993,549 - ABZR87_RS20535 0.34 -2.9
993,692 + ABZR87_RS20535 0.41 +2.1
993,692 + ABZR87_RS20535 0.41 -1.2
993,692 + ABZR87_RS20535 0.41 +0.7
993,692 + ABZR87_RS20535 0.41 -2.9
993,693 - ABZR87_RS20535 0.41 +0.1
993,693 - ABZR87_RS20535 0.41 +0.0
993,693 - ABZR87_RS20535 0.41 -1.5

Or see this region's nucleotide sequence