Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20410 and ABZR87_RS20415 are separated by 63 nucleotides ABZR87_RS20415 and ABZR87_RS20420 are separated by 2 nucleotides ABZR87_RS20420 and ABZR87_RS20425 are separated by 68 nucleotides ABZR87_RS20425 and ABZR87_RS20430 overlap by 4 nucleotides ABZR87_RS20430 and ABZR87_RS20435 overlap by 4 nucleotides
ABZR87_RS20410: ABZR87_RS20410 - EamA family transporter, at 967,521 to 968,408
_RS20410
ABZR87_RS20415: ABZR87_RS20415 - type II TA system antitoxin MqsA family protein, at 968,472 to 968,873
_RS20415
ABZR87_RS20420: ABZR87_RS20420 - type II toxin-antitoxin system MqsR family toxin, at 968,876 to 969,178
_RS20420
ABZR87_RS20425: ABZR87_RS20425 - EAL domain-containing protein, at 969,247 to 971,259
_RS20425
ABZR87_RS20430: ABZR87_RS20430 - YfiR family protein, at 971,256 to 971,828
_RS20430
ABZR87_RS20435: ABZR87_RS20435 - TonB-dependent receptor, at 971,825 to 973,795
_RS20435
Position (kb) 969
970
971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.569 kb on + strand, within ABZR87_RS20415 at 968.570 kb on - strand, within ABZR87_RS20415 at 968.570 kb on - strand, within ABZR87_RS20415 at 968.657 kb on - strand, within ABZR87_RS20415 at 968.671 kb on + strand, within ABZR87_RS20415 at 968.672 kb on - strand, within ABZR87_RS20415 at 968.809 kb on + strand, within ABZR87_RS20415 at 968.810 kb on - strand, within ABZR87_RS20415 at 968.810 kb on - strand, within ABZR87_RS20415 at 968.815 kb on + strand, within ABZR87_RS20415 at 968.816 kb on - strand, within ABZR87_RS20415 at 968.816 kb on - strand, within ABZR87_RS20415 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.962 kb on - strand, within ABZR87_RS20420 at 968.962 kb on - strand, within ABZR87_RS20420 at 969.009 kb on + strand, within ABZR87_RS20420 at 969.009 kb on + strand, within ABZR87_RS20420 at 969.010 kb on - strand, within ABZR87_RS20420 at 969.010 kb on - strand, within ABZR87_RS20420 at 969.065 kb on - strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.110 kb on + strand, within ABZR87_RS20420 at 969.164 kb on - strand at 969.164 kb on - strand at 969.202 kb on + strand at 969.205 kb on - strand at 969.211 kb on + strand at 969.211 kb on + strand at 969.211 kb on + strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.248 kb on + strand at 969.249 kb on - strand at 969.390 kb on - strand at 969.587 kb on + strand, within ABZR87_RS20425 at 969.588 kb on - strand, within ABZR87_RS20425 at 969.602 kb on + strand, within ABZR87_RS20425 at 969.993 kb on - strand, within ABZR87_RS20425 at 970.058 kb on + strand, within ABZR87_RS20425 at 970.059 kb on - strand, within ABZR87_RS20425 at 970.108 kb on + strand, within ABZR87_RS20425 at 970.150 kb on - strand, within ABZR87_RS20425 at 970.190 kb on + strand, within ABZR87_RS20425 at 970.190 kb on + strand, within ABZR87_RS20425 at 970.190 kb on + strand, within ABZR87_RS20425 at 970.191 kb on - strand, within ABZR87_RS20425 at 970.191 kb on - strand, within ABZR87_RS20425 at 970.191 kb on - strand, within ABZR87_RS20425 at 970.191 kb on - strand, within ABZR87_RS20425 at 970.277 kb on + strand, within ABZR87_RS20425 at 970.277 kb on + strand, within ABZR87_RS20425 at 970.671 kb on - strand, within ABZR87_RS20425 at 970.671 kb on - strand, within ABZR87_RS20425 at 970.775 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.793 kb on + strand, within ABZR87_RS20425 at 970.888 kb on + strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.889 kb on - strand, within ABZR87_RS20425 at 970.952 kb on + strand, within ABZR87_RS20425 at 970.953 kb on - strand, within ABZR87_RS20425 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.671 kb on + strand, within ABZR87_RS20430 at 971.838 kb on + strand at 971.838 kb on + strand at 971.838 kb on + strand at 971.839 kb on - strand at 971.937 kb on + strand at 971.938 kb on - strand at 971.938 kb on - strand at 972.006 kb on + strand at 972.048 kb on + strand, within ABZR87_RS20435 at 972.048 kb on + strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.049 kb on - strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.177 kb on + strand, within ABZR87_RS20435 at 972.178 kb on - strand, within ABZR87_RS20435 at 972.219 kb on + strand, within ABZR87_RS20435
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 968,250 + ABZR87_RS20410 0.82 -0.3 968,250 + ABZR87_RS20410 0.82 -0.6 968,250 + ABZR87_RS20410 0.82 +1.3 968,250 + ABZR87_RS20410 0.82 -1.3 968,250 + ABZR87_RS20410 0.82 -0.0 968,250 + ABZR87_RS20410 0.82 -2.5 968,250 + ABZR87_RS20410 0.82 -0.1 968,251 - ABZR87_RS20410 0.82 -1.3 968,251 - ABZR87_RS20410 0.82 +1.4 968,251 - ABZR87_RS20410 0.82 +0.5 968,256 + ABZR87_RS20410 0.83 +0.3 968,256 + ABZR87_RS20410 0.83 +0.1 968,256 + ABZR87_RS20410 0.83 -0.8 968,256 + ABZR87_RS20410 0.83 -1.7 968,257 - ABZR87_RS20410 0.83 +1.2 968,257 - ABZR87_RS20410 0.83 +0.2 968,257 - ABZR87_RS20410 0.83 -1.4 968,257 - ABZR87_RS20410 0.83 +1.8 968,257 - ABZR87_RS20410 0.83 -2.0 968,257 - ABZR87_RS20410 0.83 -0.8 968,257 - ABZR87_RS20410 0.83 -3.1 968,569 + ABZR87_RS20415 0.24 -0.4 968,570 - ABZR87_RS20415 0.24 -0.7 968,570 - ABZR87_RS20415 0.24 -0.4 968,657 - ABZR87_RS20415 0.46 +0.3 968,671 + ABZR87_RS20415 0.50 +0.2 968,672 - ABZR87_RS20415 0.50 -0.3 968,809 + ABZR87_RS20415 0.84 +0.1 968,810 - ABZR87_RS20415 0.84 -0.0 968,810 - ABZR87_RS20415 0.84 +0.4 968,815 + ABZR87_RS20415 0.85 +2.0 968,816 - ABZR87_RS20415 0.86 +0.5 968,816 - ABZR87_RS20415 0.86 -0.2 968,961 + ABZR87_RS20420 0.28 +3.3 968,961 + ABZR87_RS20420 0.28 +1.4 968,961 + ABZR87_RS20420 0.28 +1.4 968,962 - ABZR87_RS20420 0.28 +0.2 968,962 - ABZR87_RS20420 0.28 +0.8 969,009 + ABZR87_RS20420 0.44 +0.5 969,009 + ABZR87_RS20420 0.44 +1.9 969,010 - ABZR87_RS20420 0.44 -2.0 969,010 - ABZR87_RS20420 0.44 -0.5 969,065 - ABZR87_RS20420 0.62 +1.3 969,090 + ABZR87_RS20420 0.71 +0.2 969,090 + ABZR87_RS20420 0.71 -0.8 969,090 + ABZR87_RS20420 0.71 -0.0 969,090 + ABZR87_RS20420 0.71 -0.3 969,090 + ABZR87_RS20420 0.71 -0.7 969,091 - ABZR87_RS20420 0.71 +2.1 969,091 - ABZR87_RS20420 0.71 -2.6 969,091 - ABZR87_RS20420 0.71 -0.3 969,110 + ABZR87_RS20420 0.77 +0.5 969,164 - -1.0 969,164 - -0.6 969,202 + -0.4 969,205 - +1.5 969,211 + -0.4 969,211 + -0.1 969,211 + -0.5 969,212 - +0.6 969,212 - -1.4 969,212 - -0.6 969,212 - -0.6 969,212 - -0.2 969,248 + +0.9 969,249 - -0.9 969,390 - -0.3 969,587 + ABZR87_RS20425 0.17 +0.1 969,588 - ABZR87_RS20425 0.17 -0.1 969,602 + ABZR87_RS20425 0.18 +0.4 969,993 - ABZR87_RS20425 0.37 -0.2 970,058 + ABZR87_RS20425 0.40 +0.5 970,059 - ABZR87_RS20425 0.40 -0.1 970,108 + ABZR87_RS20425 0.43 +0.6 970,150 - ABZR87_RS20425 0.45 -0.1 970,190 + ABZR87_RS20425 0.47 +0.3 970,190 + ABZR87_RS20425 0.47 +0.9 970,190 + ABZR87_RS20425 0.47 -1.1 970,191 - ABZR87_RS20425 0.47 +1.7 970,191 - ABZR87_RS20425 0.47 -1.8 970,191 - ABZR87_RS20425 0.47 -0.4 970,191 - ABZR87_RS20425 0.47 -0.6 970,277 + ABZR87_RS20425 0.51 +0.7 970,277 + ABZR87_RS20425 0.51 +0.5 970,671 - ABZR87_RS20425 0.71 +0.2 970,671 - ABZR87_RS20425 0.71 -1.5 970,775 + ABZR87_RS20425 0.76 -0.5 970,793 + ABZR87_RS20425 0.77 +0.2 970,793 + ABZR87_RS20425 0.77 +0.3 970,793 + ABZR87_RS20425 0.77 +2.7 970,888 + ABZR87_RS20425 0.82 -0.3 970,889 - ABZR87_RS20425 0.82 -1.0 970,889 - ABZR87_RS20425 0.82 -1.2 970,952 + ABZR87_RS20425 0.85 -0.2 970,953 - ABZR87_RS20425 0.85 -0.1 971,671 + ABZR87_RS20430 0.72 +0.0 971,671 + ABZR87_RS20430 0.72 -0.3 971,671 + ABZR87_RS20430 0.72 +0.0 971,671 + ABZR87_RS20430 0.72 -1.4 971,838 + +0.5 971,838 + +2.0 971,838 + +0.1 971,839 - +4.8 971,937 + +0.6 971,938 - +4.1 971,938 - +6.0 972,006 + +0.7 972,048 + ABZR87_RS20435 0.11 +2.8 972,048 + ABZR87_RS20435 0.11 -1.3 972,049 - ABZR87_RS20435 0.11 +4.8 972,049 - ABZR87_RS20435 0.11 +4.8 972,177 + ABZR87_RS20435 0.18 +0.0 972,177 + ABZR87_RS20435 0.18 -0.7 972,177 + ABZR87_RS20435 0.18 +0.3 972,178 - ABZR87_RS20435 0.18 +5.6 972,219 + ABZR87_RS20435 0.20 +0.1
Or see this region's nucleotide sequence