Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19590

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19585 and ABZR87_RS19590 are separated by 170 nucleotidesABZR87_RS19590 and ABZR87_RS19595 are separated by 59 nucleotides ABZR87_RS19585: ABZR87_RS19585 - cytochrome P450, at 765,935 to 769,174 _RS19585 ABZR87_RS19590: ABZR87_RS19590 - hypothetical protein, at 769,345 to 769,635 _RS19590 ABZR87_RS19595: ABZR87_RS19595 - Gfo/Idh/MocA family oxidoreductase, at 769,695 to 770,849 _RS19595 Position (kb) 769 770Strain fitness (log2 ratio) -2 -1 0 1 2at 768.515 kb on + strand, within ABZR87_RS19585at 768.515 kb on + strand, within ABZR87_RS19585at 768.515 kb on + strand, within ABZR87_RS19585at 768.515 kb on + strand, within ABZR87_RS19585at 768.516 kb on - strand, within ABZR87_RS19585at 768.516 kb on - strand, within ABZR87_RS19585at 768.609 kb on - strand, within ABZR87_RS19585at 768.629 kb on + strand, within ABZR87_RS19585at 768.630 kb on - strand, within ABZR87_RS19585at 768.630 kb on - strand, within ABZR87_RS19585at 768.864 kb on - strandat 768.921 kb on - strandat 768.986 kb on - strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.019 kb on + strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.020 kb on - strandat 769.408 kb on + strand, within ABZR87_RS19590at 769.409 kb on - strand, within ABZR87_RS19590at 769.409 kb on - strand, within ABZR87_RS19590at 769.409 kb on - strand, within ABZR87_RS19590at 769.420 kb on + strand, within ABZR87_RS19590at 769.420 kb on + strand, within ABZR87_RS19590at 769.423 kb on - strand, within ABZR87_RS19590at 769.633 kb on + strandat 769.633 kb on + strandat 769.633 kb on + strandat 769.696 kb on + strandat 769.697 kb on - strandat 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.921 kb on + strand, within ABZR87_RS19595at 769.922 kb on - strand, within ABZR87_RS19595at 769.922 kb on - strand, within ABZR87_RS19595at 769.996 kb on + strand, within ABZR87_RS19595at 769.997 kb on - strand, within ABZR87_RS19595at 770.090 kb on - strand, within ABZR87_RS19595at 770.245 kb on + strand, within ABZR87_RS19595at 770.245 kb on + strand, within ABZR87_RS19595at 770.246 kb on - strand, within ABZR87_RS19595at 770.246 kb on - strand, within ABZR87_RS19595at 770.278 kb on + strand, within ABZR87_RS19595at 770.279 kb on - strand, within ABZR87_RS19595at 770.539 kb on + strand, within ABZR87_RS19595at 770.540 kb on - strand, within ABZR87_RS19595at 770.540 kb on - strand, within ABZR87_RS19595at 770.540 kb on - strand, within ABZR87_RS19595at 770.572 kb on + strand, within ABZR87_RS19595at 770.611 kb on + strand, within ABZR87_RS19595at 770.611 kb on + strand, within ABZR87_RS19595at 770.611 kb on + strand, within ABZR87_RS19595at 770.612 kb on - strand, within ABZR87_RS19595at 770.612 kb on - strand, within ABZR87_RS19595at 770.612 kb on - strand, within ABZR87_RS19595at 770.620 kb on + strand, within ABZR87_RS19595

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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768,515 + ABZR87_RS19585 0.80 -1.0
768,515 + ABZR87_RS19585 0.80 -0.5
768,515 + ABZR87_RS19585 0.80 +1.2
768,515 + ABZR87_RS19585 0.80 +0.5
768,516 - ABZR87_RS19585 0.80 -0.8
768,516 - ABZR87_RS19585 0.80 +0.5
768,609 - ABZR87_RS19585 0.83 +0.5
768,629 + ABZR87_RS19585 0.83 -0.6
768,630 - ABZR87_RS19585 0.83 -0.3
768,630 - ABZR87_RS19585 0.83 -2.1
768,864 - -0.2
768,921 - -0.5
768,986 - -0.8
769,019 + +1.3
769,019 + +1.5
769,019 + +0.1
769,019 + -0.6
769,019 + -1.0
769,019 + -0.0
769,019 + -0.1
769,019 + +0.6
769,019 + +0.2
769,019 + -1.2
769,019 + +0.3
769,019 + -0.9
769,019 + +0.8
769,020 - -0.4
769,020 - +0.1
769,020 - +0.4
769,020 - +0.5
769,020 - -0.2
769,020 - +1.3
769,020 - -1.3
769,020 - -1.6
769,020 - -0.6
769,020 - +0.8
769,020 - +0.3
769,408 + ABZR87_RS19590 0.22 +0.1
769,409 - ABZR87_RS19590 0.22 +1.5
769,409 - ABZR87_RS19590 0.22 +0.7
769,409 - ABZR87_RS19590 0.22 +0.4
769,420 + ABZR87_RS19590 0.26 +0.7
769,420 + ABZR87_RS19590 0.26 +0.3
769,423 - ABZR87_RS19590 0.27 +0.5
769,633 + +0.1
769,633 + +0.9
769,633 + -0.2
769,696 + -0.6
769,697 - -0.5
769,921 + ABZR87_RS19595 0.20 -0.0
769,921 + ABZR87_RS19595 0.20 +0.7
769,921 + ABZR87_RS19595 0.20 -1.2
769,921 + ABZR87_RS19595 0.20 -1.1
769,921 + ABZR87_RS19595 0.20 -0.3
769,921 + ABZR87_RS19595 0.20 +0.5
769,921 + ABZR87_RS19595 0.20 +0.1
769,922 - ABZR87_RS19595 0.20 -1.3
769,922 - ABZR87_RS19595 0.20 -0.6
769,996 + ABZR87_RS19595 0.26 +0.7
769,997 - ABZR87_RS19595 0.26 +0.1
770,090 - ABZR87_RS19595 0.34 -1.0
770,245 + ABZR87_RS19595 0.48 +0.0
770,245 + ABZR87_RS19595 0.48 +0.1
770,246 - ABZR87_RS19595 0.48 -1.3
770,246 - ABZR87_RS19595 0.48 +0.9
770,278 + ABZR87_RS19595 0.50 -1.2
770,279 - ABZR87_RS19595 0.51 +1.0
770,539 + ABZR87_RS19595 0.73 +1.6
770,540 - ABZR87_RS19595 0.73 -1.1
770,540 - ABZR87_RS19595 0.73 +2.3
770,540 - ABZR87_RS19595 0.73 -0.2
770,572 + ABZR87_RS19595 0.76 -0.5
770,611 + ABZR87_RS19595 0.79 -0.5
770,611 + ABZR87_RS19595 0.79 +1.0
770,611 + ABZR87_RS19595 0.79 +0.9
770,612 - ABZR87_RS19595 0.79 +2.1
770,612 - ABZR87_RS19595 0.79 +1.8
770,612 - ABZR87_RS19595 0.79 +1.1
770,620 + ABZR87_RS19595 0.80 +0.2

Or see this region's nucleotide sequence