Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19345 and ABZR87_RS19350 are separated by 211 nucleotides ABZR87_RS19350 and ABZR87_RS19355 are separated by 148 nucleotides
ABZR87_RS19345: ABZR87_RS19345 - glutaminase, at 705,951 to 706,865
_RS19345
ABZR87_RS19350: ABZR87_RS19350 - putative hydro-lyase, at 707,077 to 707,904
_RS19350
ABZR87_RS19355: ABZR87_RS19355 - MFS transporter, at 708,053 to 709,354
_RS19355
Position (kb) 707
708 Strain fitness (log2 ratio) -2
-1
0
1
2 at 706.123 kb on + strand, within ABZR87_RS19345 at 706.123 kb on + strand, within ABZR87_RS19345 at 706.303 kb on + strand, within ABZR87_RS19345 at 706.420 kb on + strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.421 kb on - strand, within ABZR87_RS19345 at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.789 kb on + strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.790 kb on - strand at 706.817 kb on - strand at 706.858 kb on + strand at 706.858 kb on + strand at 706.943 kb on + strand at 707.135 kb on - strand at 707.135 kb on - strand at 707.147 kb on - strand at 707.212 kb on + strand, within ABZR87_RS19350 at 707.244 kb on + strand, within ABZR87_RS19350 at 707.245 kb on - strand, within ABZR87_RS19350 at 707.331 kb on - strand, within ABZR87_RS19350 at 707.389 kb on + strand, within ABZR87_RS19350 at 707.551 kb on + strand, within ABZR87_RS19350 at 707.551 kb on + strand, within ABZR87_RS19350 at 707.552 kb on - strand, within ABZR87_RS19350 at 707.552 kb on - strand, within ABZR87_RS19350 at 707.578 kb on - strand, within ABZR87_RS19350 at 707.578 kb on - strand, within ABZR87_RS19350 at 707.651 kb on - strand, within ABZR87_RS19350 at 707.728 kb on - strand, within ABZR87_RS19350 at 707.997 kb on + strand at 707.998 kb on - strand at 707.999 kb on + strand at 707.999 kb on + strand at 708.000 kb on - strand at 708.000 kb on - strand at 708.000 kb on - strand at 708.035 kb on + strand at 708.036 kb on - strand at 708.137 kb on + strand at 708.596 kb on + strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.597 kb on - strand, within ABZR87_RS19355 at 708.678 kb on + strand, within ABZR87_RS19355 at 708.808 kb on - strand, within ABZR87_RS19355 at 708.836 kb on + strand, within ABZR87_RS19355 at 708.836 kb on + strand, within ABZR87_RS19355 at 708.837 kb on - strand, within ABZR87_RS19355 at 708.837 kb on - strand, within ABZR87_RS19355 at 708.837 kb on - strand, within ABZR87_RS19355
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 706,123 + ABZR87_RS19345 0.19 -1.1 706,123 + ABZR87_RS19345 0.19 +0.2 706,303 + ABZR87_RS19345 0.38 +0.7 706,420 + ABZR87_RS19345 0.51 +0.9 706,421 - ABZR87_RS19345 0.51 -0.3 706,421 - ABZR87_RS19345 0.51 -0.7 706,421 - ABZR87_RS19345 0.51 -0.8 706,789 + -0.1 706,789 + -1.7 706,789 + +1.0 706,789 + -0.3 706,789 + +1.0 706,790 - +1.0 706,790 - +0.1 706,790 - -2.1 706,790 - +0.3 706,790 - +1.2 706,790 - -0.7 706,790 - -1.7 706,817 - +1.0 706,858 + -0.9 706,858 + -0.9 706,943 + +0.1 707,135 - +0.2 707,135 - +1.2 707,147 - +0.6 707,212 + ABZR87_RS19350 0.16 -1.5 707,244 + ABZR87_RS19350 0.20 -0.6 707,245 - ABZR87_RS19350 0.20 -1.9 707,331 - ABZR87_RS19350 0.31 -1.9 707,389 + ABZR87_RS19350 0.38 -1.4 707,551 + ABZR87_RS19350 0.57 -1.5 707,551 + ABZR87_RS19350 0.57 +0.5 707,552 - ABZR87_RS19350 0.57 -0.6 707,552 - ABZR87_RS19350 0.57 +0.7 707,578 - ABZR87_RS19350 0.61 -0.1 707,578 - ABZR87_RS19350 0.61 +0.3 707,651 - ABZR87_RS19350 0.69 +0.9 707,728 - ABZR87_RS19350 0.79 -0.3 707,997 + -1.5 707,998 - +0.9 707,999 + +0.4 707,999 + -1.6 708,000 - +0.3 708,000 - -1.1 708,000 - -1.3 708,035 + +0.8 708,036 - +0.3 708,137 + -0.1 708,596 + ABZR87_RS19355 0.42 +1.0 708,597 - ABZR87_RS19355 0.42 +0.9 708,597 - ABZR87_RS19355 0.42 +0.5 708,597 - ABZR87_RS19355 0.42 -0.6 708,597 - ABZR87_RS19355 0.42 -1.1 708,597 - ABZR87_RS19355 0.42 +1.2 708,678 + ABZR87_RS19355 0.48 -0.1 708,808 - ABZR87_RS19355 0.58 +0.7 708,836 + ABZR87_RS19355 0.60 -0.2 708,836 + ABZR87_RS19355 0.60 +0.2 708,837 - ABZR87_RS19355 0.60 +0.7 708,837 - ABZR87_RS19355 0.60 -0.3 708,837 - ABZR87_RS19355 0.60 +2.0
Or see this region's nucleotide sequence