Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19245 and ABZR87_RS19250 are separated by 68 nucleotides ABZR87_RS19250 and ABZR87_RS19255 are separated by 59 nucleotides ABZR87_RS19255 and ABZR87_RS19260 are separated by 56 nucleotides
ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917
_RS19245
ABZR87_RS19250: ABZR87_RS19250 - lytic transglycosylase domain-containing protein, at 680,986 to 681,717
_RS19250
ABZR87_RS19255: ABZR87_RS19255 - type III secretion system export apparatus subunit SctR, at 681,777 to 682,436
_RS19255
ABZR87_RS19260: ABZR87_RS19260 - type III secretion system cytoplasmic ring protein SctQ, at 682,493 to 683,578
_RS19260
Position (kb) 680
681
682 Strain fitness (log2 ratio) -1
0
1
2
3 at 680.028 kb on + strand, within ABZR87_RS19245 at 680.282 kb on + strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.367 kb on - strand, within ABZR87_RS19245 at 680.705 kb on - strand, within ABZR87_RS19245 at 680.705 kb on - strand, within ABZR87_RS19245 at 680.832 kb on - strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.888 kb on + strand at 680.889 kb on - strand at 680.889 kb on - strand at 680.889 kb on - strand at 681.251 kb on + strand, within ABZR87_RS19250 at 681.252 kb on - strand, within ABZR87_RS19250 at 681.252 kb on - strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.287 kb on + strand, within ABZR87_RS19250 at 681.288 kb on - strand, within ABZR87_RS19250 at 681.290 kb on + strand, within ABZR87_RS19250 at 681.290 kb on + strand, within ABZR87_RS19250 at 681.291 kb on - strand, within ABZR87_RS19250 at 681.891 kb on + strand, within ABZR87_RS19255 at 681.943 kb on + strand, within ABZR87_RS19255 at 681.944 kb on - strand, within ABZR87_RS19255 at 681.944 kb on - strand, within ABZR87_RS19255 at 682.100 kb on + strand, within ABZR87_RS19255 at 682.100 kb on + strand, within ABZR87_RS19255 at 682.101 kb on - strand, within ABZR87_RS19255 at 682.101 kb on - strand, within ABZR87_RS19255 at 682.349 kb on - strand, within ABZR87_RS19255 at 682.349 kb on - strand, within ABZR87_RS19255 at 682.451 kb on + strand at 682.451 kb on + strand at 682.452 kb on - strand at 682.494 kb on + strand at 682.495 kb on - strand at 682.495 kb on - strand at 682.520 kb on + strand at 682.520 kb on + strand at 682.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 680,028 + ABZR87_RS19245 0.19 +0.0 680,282 + ABZR87_RS19245 0.42 +0.9 680,283 - ABZR87_RS19245 0.42 +0.4 680,283 - ABZR87_RS19245 0.42 +0.9 680,339 + ABZR87_RS19245 0.48 +0.4 680,339 + ABZR87_RS19245 0.48 +0.1 680,339 + ABZR87_RS19245 0.48 +1.0 680,340 - ABZR87_RS19245 0.48 +0.3 680,340 - ABZR87_RS19245 0.48 +2.3 680,340 - ABZR87_RS19245 0.48 +0.2 680,367 - ABZR87_RS19245 0.50 -0.9 680,705 - ABZR87_RS19245 0.81 -0.3 680,705 - ABZR87_RS19245 0.81 -0.1 680,832 - +0.7 680,888 + -0.4 680,888 + +0.6 680,888 + -1.1 680,888 + -0.3 680,889 - -1.7 680,889 - +0.6 680,889 - +1.1 681,251 + ABZR87_RS19250 0.36 -0.7 681,252 - ABZR87_RS19250 0.36 -0.2 681,252 - ABZR87_RS19250 0.36 +0.4 681,287 + ABZR87_RS19250 0.41 +0.1 681,287 + ABZR87_RS19250 0.41 +0.3 681,287 + ABZR87_RS19250 0.41 -0.3 681,287 + ABZR87_RS19250 0.41 +0.3 681,288 - ABZR87_RS19250 0.41 -0.2 681,290 + ABZR87_RS19250 0.42 -0.5 681,290 + ABZR87_RS19250 0.42 -0.1 681,291 - ABZR87_RS19250 0.42 +0.8 681,891 + ABZR87_RS19255 0.17 +1.1 681,943 + ABZR87_RS19255 0.25 +1.5 681,944 - ABZR87_RS19255 0.25 +3.5 681,944 - ABZR87_RS19255 0.25 +0.6 682,100 + ABZR87_RS19255 0.49 -0.3 682,100 + ABZR87_RS19255 0.49 +1.2 682,101 - ABZR87_RS19255 0.49 -1.6 682,101 - ABZR87_RS19255 0.49 -0.9 682,349 - ABZR87_RS19255 0.87 -0.0 682,349 - ABZR87_RS19255 0.87 +0.4 682,451 + -1.0 682,451 + +0.3 682,452 - +0.0 682,494 + +1.9 682,495 - -0.6 682,495 - +1.0 682,520 + +0.0 682,520 + +1.1 682,521 - -0.7
Or see this region's nucleotide sequence