Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18565

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18560 and ABZR87_RS18565 are separated by 124 nucleotidesABZR87_RS18565 and ABZR87_RS18570 are separated by 83 nucleotidesABZR87_RS18570 and ABZR87_RS18575 are separated by 17 nucleotides ABZR87_RS18560: ABZR87_RS18560 - NmrA family NAD(P)-binding protein, at 519,259 to 520,149 _RS18560 ABZR87_RS18565: ABZR87_RS18565 - hypothetical protein, at 520,274 to 521,059 _RS18565 ABZR87_RS18570: ABZR87_RS18570 - hypothetical protein, at 521,143 to 521,697 _RS18570 ABZR87_RS18575: ABZR87_RS18575 - DUF1304 domain-containing protein, at 521,715 to 522,077 _RS18575 Position (kb) 520 521 522Strain fitness (log2 ratio) -1 0 1 2 3 4at 519.950 kb on + strand, within ABZR87_RS18560at 520.027 kb on + strand, within ABZR87_RS18560at 520.028 kb on - strand, within ABZR87_RS18560at 520.164 kb on + strandat 520.187 kb on + strandat 520.188 kb on - strandat 520.217 kb on - strandat 520.244 kb on + strandat 520.244 kb on + strandat 520.244 kb on + strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.245 kb on - strandat 520.373 kb on + strand, within ABZR87_RS18565at 520.374 kb on - strand, within ABZR87_RS18565at 520.374 kb on - strand, within ABZR87_RS18565at 520.374 kb on - strand, within ABZR87_RS18565at 520.374 kb on - strand, within ABZR87_RS18565at 520.376 kb on - strand, within ABZR87_RS18565at 520.426 kb on + strand, within ABZR87_RS18565at 520.426 kb on + strand, within ABZR87_RS18565at 520.512 kb on - strand, within ABZR87_RS18565at 520.544 kb on + strand, within ABZR87_RS18565at 520.545 kb on - strand, within ABZR87_RS18565at 520.545 kb on - strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.580 kb on + strand, within ABZR87_RS18565at 520.581 kb on - strand, within ABZR87_RS18565at 520.710 kb on + strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.728 kb on - strand, within ABZR87_RS18565at 520.843 kb on + strand, within ABZR87_RS18565at 520.878 kb on - strand, within ABZR87_RS18565at 520.878 kb on - strand, within ABZR87_RS18565at 520.878 kb on - strand, within ABZR87_RS18565at 520.939 kb on - strand, within ABZR87_RS18565at 521.087 kb on + strandat 521.087 kb on + strandat 521.389 kb on + strand, within ABZR87_RS18570at 521.486 kb on + strand, within ABZR87_RS18570at 521.487 kb on - strand, within ABZR87_RS18570at 521.487 kb on - strand, within ABZR87_RS18570at 521.519 kb on + strand, within ABZR87_RS18570at 521.531 kb on - strand, within ABZR87_RS18570at 521.627 kb on - strand, within ABZR87_RS18570at 521.688 kb on + strandat 521.689 kb on - strandat 521.689 kb on - strandat 521.911 kb on + strand, within ABZR87_RS18575at 521.912 kb on - strand, within ABZR87_RS18575at 521.912 kb on - strand, within ABZR87_RS18575at 522.013 kb on - strand, within ABZR87_RS18575at 522.022 kb on + strand, within ABZR87_RS18575at 522.022 kb on + strand, within ABZR87_RS18575at 522.022 kb on + strand, within ABZR87_RS18575at 522.022 kb on + strand, within ABZR87_RS18575at 522.023 kb on - strand, within ABZR87_RS18575at 522.023 kb on - strand, within ABZR87_RS18575at 522.023 kb on - strand, within ABZR87_RS18575at 522.023 kb on - strand, within ABZR87_RS18575at 522.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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519,950 + ABZR87_RS18560 0.78 +1.0
520,027 + ABZR87_RS18560 0.86 -0.2
520,028 - ABZR87_RS18560 0.86 +0.4
520,164 + -1.0
520,187 + -0.7
520,188 - +3.7
520,217 - +1.0
520,244 + -0.5
520,244 + -0.2
520,244 + +1.0
520,245 - +0.3
520,245 - -0.5
520,245 - +0.4
520,245 - -0.2
520,245 - -0.4
520,245 - -0.9
520,245 - +1.3
520,373 + ABZR87_RS18565 0.13 -1.4
520,374 - ABZR87_RS18565 0.13 +0.5
520,374 - ABZR87_RS18565 0.13 +0.2
520,374 - ABZR87_RS18565 0.13 -1.0
520,374 - ABZR87_RS18565 0.13 -0.6
520,376 - ABZR87_RS18565 0.13 -0.5
520,426 + ABZR87_RS18565 0.19 +0.1
520,426 + ABZR87_RS18565 0.19 +1.5
520,512 - ABZR87_RS18565 0.30 +0.5
520,544 + ABZR87_RS18565 0.34 -1.3
520,545 - ABZR87_RS18565 0.34 -0.5
520,545 - ABZR87_RS18565 0.34 +1.5
520,580 + ABZR87_RS18565 0.39 -0.5
520,580 + ABZR87_RS18565 0.39 +4.6
520,580 + ABZR87_RS18565 0.39 +0.8
520,580 + ABZR87_RS18565 0.39 -1.4
520,580 + ABZR87_RS18565 0.39 +1.3
520,580 + ABZR87_RS18565 0.39 +0.6
520,581 - ABZR87_RS18565 0.39 +1.7
520,710 + ABZR87_RS18565 0.55 +0.8
520,728 - ABZR87_RS18565 0.58 +0.9
520,728 - ABZR87_RS18565 0.58 -0.3
520,728 - ABZR87_RS18565 0.58 -0.3
520,728 - ABZR87_RS18565 0.58 +0.6
520,728 - ABZR87_RS18565 0.58 -0.3
520,843 + ABZR87_RS18565 0.72 -1.1
520,878 - ABZR87_RS18565 0.77 +1.5
520,878 - ABZR87_RS18565 0.77 +0.5
520,878 - ABZR87_RS18565 0.77 +0.5
520,939 - ABZR87_RS18565 0.85 +0.9
521,087 + +0.6
521,087 + +0.2
521,389 + ABZR87_RS18570 0.44 +0.1
521,486 + ABZR87_RS18570 0.62 -0.4
521,487 - ABZR87_RS18570 0.62 -1.0
521,487 - ABZR87_RS18570 0.62 +4.4
521,519 + ABZR87_RS18570 0.68 -0.4
521,531 - ABZR87_RS18570 0.70 -0.7
521,627 - ABZR87_RS18570 0.87 -0.9
521,688 + +0.6
521,689 - -0.1
521,689 - -0.4
521,911 + ABZR87_RS18575 0.54 -1.0
521,912 - ABZR87_RS18575 0.54 -0.0
521,912 - ABZR87_RS18575 0.54 +0.0
522,013 - ABZR87_RS18575 0.82 +0.3
522,022 + ABZR87_RS18575 0.85 -0.0
522,022 + ABZR87_RS18575 0.85 +1.0
522,022 + ABZR87_RS18575 0.85 +0.5
522,022 + ABZR87_RS18575 0.85 -0.8
522,023 - ABZR87_RS18575 0.85 +0.4
522,023 - ABZR87_RS18575 0.85 +0.7
522,023 - ABZR87_RS18575 0.85 +0.1
522,023 - ABZR87_RS18575 0.85 -0.1
522,050 - -0.6

Or see this region's nucleotide sequence