Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17530 and ABZR87_RS17535 overlap by 1 nucleotides ABZR87_RS17535 and ABZR87_RS17540 are separated by 5 nucleotides ABZR87_RS17540 and ABZR87_RS17545 are separated by 61 nucleotides
ABZR87_RS17530: ABZR87_RS17530 - diguanylate cyclase, at 295,132 to 295,830
_RS17530
ABZR87_RS17535: ABZR87_RS17535 - NAD(P)-dependent oxidoreductase, at 295,830 to 296,780
_RS17535
ABZR87_RS17540: ABZR87_RS17540 - SMP-30/gluconolactonase/LRE family protein, at 296,786 to 297,736
_RS17540
ABZR87_RS17545: ABZR87_RS17545 - MFS transporter, at 297,798 to 299,162
_RS17545
Position (kb) 296
297
298 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 295.828 kb on + strand at 295.828 kb on + strand at 295.828 kb on + strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.829 kb on - strand at 295.829 kb on - strand at 296.002 kb on - strand, within ABZR87_RS17535 at 296.342 kb on + strand, within ABZR87_RS17535 at 296.367 kb on + strand, within ABZR87_RS17535 at 296.368 kb on - strand, within ABZR87_RS17535 at 296.368 kb on - strand, within ABZR87_RS17535 at 296.419 kb on - strand, within ABZR87_RS17535 at 296.655 kb on - strand, within ABZR87_RS17535 at 296.707 kb on - strand at 296.707 kb on - strand at 296.966 kb on + strand, within ABZR87_RS17540 at 296.966 kb on + strand, within ABZR87_RS17540 at 296.966 kb on + strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 296.967 kb on - strand, within ABZR87_RS17540 at 297.038 kb on + strand, within ABZR87_RS17540 at 297.150 kb on - strand, within ABZR87_RS17540 at 297.150 kb on - strand, within ABZR87_RS17540 at 297.221 kb on + strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.222 kb on - strand, within ABZR87_RS17540 at 297.365 kb on + strand, within ABZR87_RS17540 at 297.366 kb on - strand, within ABZR87_RS17540 at 297.366 kb on - strand, within ABZR87_RS17540 at 297.449 kb on - strand, within ABZR87_RS17540 at 297.455 kb on + strand, within ABZR87_RS17540 at 297.540 kb on + strand, within ABZR87_RS17540 at 297.541 kb on - strand, within ABZR87_RS17540 at 297.750 kb on + strand at 297.751 kb on - strand at 297.751 kb on - strand at 297.942 kb on + strand, within ABZR87_RS17545 at 297.942 kb on + strand, within ABZR87_RS17545 at 297.942 kb on + strand, within ABZR87_RS17545 at 297.942 kb on + strand, within ABZR87_RS17545 at 297.942 kb on + strand, within ABZR87_RS17545 at 297.943 kb on - strand, within ABZR87_RS17545 at 297.943 kb on - strand, within ABZR87_RS17545 at 297.954 kb on + strand, within ABZR87_RS17545 at 297.954 kb on + strand, within ABZR87_RS17545 at 297.955 kb on - strand, within ABZR87_RS17545 at 297.955 kb on - strand, within ABZR87_RS17545 at 298.059 kb on + strand, within ABZR87_RS17545 at 298.059 kb on + strand, within ABZR87_RS17545 at 298.245 kb on + strand, within ABZR87_RS17545 at 298.245 kb on + strand, within ABZR87_RS17545 at 298.245 kb on + strand, within ABZR87_RS17545 at 298.245 kb on + strand, within ABZR87_RS17545 at 298.246 kb on - strand, within ABZR87_RS17545 at 298.246 kb on - strand, within ABZR87_RS17545 at 298.246 kb on - strand, within ABZR87_RS17545 at 298.246 kb on - strand, within ABZR87_RS17545 at 298.246 kb on - strand, within ABZR87_RS17545 at 298.246 kb on - strand, within ABZR87_RS17545 at 298.246 kb on - strand, within ABZR87_RS17545 at 298.252 kb on - strand, within ABZR87_RS17545 at 298.511 kb on - strand, within ABZR87_RS17545
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 295,828 + +0.4 295,828 + -0.7 295,828 + +0.1 295,829 - +0.7 295,829 - -0.9 295,829 - +0.1 295,829 - -0.0 296,002 - ABZR87_RS17535 0.18 -1.5 296,342 + ABZR87_RS17535 0.54 +1.9 296,367 + ABZR87_RS17535 0.56 +0.9 296,368 - ABZR87_RS17535 0.57 -0.1 296,368 - ABZR87_RS17535 0.57 +0.2 296,419 - ABZR87_RS17535 0.62 +0.6 296,655 - ABZR87_RS17535 0.87 -0.6 296,707 - -1.0 296,707 - +0.1 296,966 + ABZR87_RS17540 0.19 +0.3 296,966 + ABZR87_RS17540 0.19 +1.1 296,966 + ABZR87_RS17540 0.19 +4.4 296,967 - ABZR87_RS17540 0.19 +0.6 296,967 - ABZR87_RS17540 0.19 -0.1 296,967 - ABZR87_RS17540 0.19 -0.2 296,967 - ABZR87_RS17540 0.19 -0.8 297,038 + ABZR87_RS17540 0.26 +0.1 297,150 - ABZR87_RS17540 0.38 +0.0 297,150 - ABZR87_RS17540 0.38 -0.1 297,221 + ABZR87_RS17540 0.46 -0.2 297,222 - ABZR87_RS17540 0.46 -0.2 297,222 - ABZR87_RS17540 0.46 +3.2 297,222 - ABZR87_RS17540 0.46 -0.2 297,365 + ABZR87_RS17540 0.61 -1.2 297,366 - ABZR87_RS17540 0.61 -0.8 297,366 - ABZR87_RS17540 0.61 +0.0 297,449 - ABZR87_RS17540 0.70 -0.1 297,455 + ABZR87_RS17540 0.70 +0.6 297,540 + ABZR87_RS17540 0.79 +0.8 297,541 - ABZR87_RS17540 0.79 -1.7 297,750 + +0.6 297,751 - -0.5 297,751 - -1.3 297,942 + ABZR87_RS17545 0.11 -0.7 297,942 + ABZR87_RS17545 0.11 -1.1 297,942 + ABZR87_RS17545 0.11 +0.6 297,942 + ABZR87_RS17545 0.11 -0.2 297,942 + ABZR87_RS17545 0.11 -1.1 297,943 - ABZR87_RS17545 0.11 +0.2 297,943 - ABZR87_RS17545 0.11 +0.8 297,954 + ABZR87_RS17545 0.11 -0.7 297,954 + ABZR87_RS17545 0.11 +0.6 297,955 - ABZR87_RS17545 0.12 -2.3 297,955 - ABZR87_RS17545 0.12 -0.3 298,059 + ABZR87_RS17545 0.19 -1.1 298,059 + ABZR87_RS17545 0.19 +2.6 298,245 + ABZR87_RS17545 0.33 -0.2 298,245 + ABZR87_RS17545 0.33 -0.0 298,245 + ABZR87_RS17545 0.33 -0.1 298,245 + ABZR87_RS17545 0.33 +0.2 298,246 - ABZR87_RS17545 0.33 -1.6 298,246 - ABZR87_RS17545 0.33 -1.9 298,246 - ABZR87_RS17545 0.33 -0.0 298,246 - ABZR87_RS17545 0.33 -0.2 298,246 - ABZR87_RS17545 0.33 +0.6 298,246 - ABZR87_RS17545 0.33 +2.0 298,246 - ABZR87_RS17545 0.33 +0.0 298,252 - ABZR87_RS17545 0.33 +0.5 298,511 - ABZR87_RS17545 0.52 -0.6
Or see this region's nucleotide sequence