Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16965

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16960 and ABZR87_RS16965 are separated by 42 nucleotidesABZR87_RS16965 and ABZR87_RS16970 overlap by 4 nucleotidesABZR87_RS16970 and ABZR87_RS16975 are separated by 5 nucleotides ABZR87_RS16960: ABZR87_RS16960 - HAMP domain-containing sensor histidine kinase, at 159,309 to 160,625 _RS16960 ABZR87_RS16965: ABZR87_RS16965 - DUF72 domain-containing protein, at 160,668 to 161,543 _RS16965 ABZR87_RS16970: ABZR87_RS16970 - SIR2 family protein, at 161,540 to 162,463 _RS16970 ABZR87_RS16975: ABZR87_RS16975 - hypothetical protein, at 162,469 to 162,627 _RS16975 Position (kb) 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 159.781 kb on - strand, within ABZR87_RS16960at 159.781 kb on - strand, within ABZR87_RS16960at 160.149 kb on + strand, within ABZR87_RS16960at 160.150 kb on - strand, within ABZR87_RS16960at 160.224 kb on + strand, within ABZR87_RS16960at 160.224 kb on + strand, within ABZR87_RS16960at 160.224 kb on + strand, within ABZR87_RS16960at 160.225 kb on - strand, within ABZR87_RS16960at 160.731 kb on - strandat 160.731 kb on - strandat 160.744 kb on + strandat 160.744 kb on + strandat 160.744 kb on + strandat 160.744 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.750 kb on + strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.751 kb on - strandat 160.787 kb on + strand, within ABZR87_RS16965at 160.787 kb on + strand, within ABZR87_RS16965at 160.787 kb on + strand, within ABZR87_RS16965at 160.885 kb on + strand, within ABZR87_RS16965at 160.946 kb on - strand, within ABZR87_RS16965at 161.195 kb on - strand, within ABZR87_RS16965at 161.320 kb on + strand, within ABZR87_RS16965at 161.321 kb on - strand, within ABZR87_RS16965at 161.321 kb on - strand, within ABZR87_RS16965at 161.404 kb on + strand, within ABZR87_RS16965at 161.449 kb on + strand, within ABZR87_RS16965at 161.449 kb on + strand, within ABZR87_RS16965at 161.449 kb on + strand, within ABZR87_RS16965at 161.449 kb on + strand, within ABZR87_RS16965at 161.450 kb on - strand, within ABZR87_RS16965at 161.485 kb on + strandat 161.486 kb on - strandat 161.486 kb on - strandat 161.510 kb on - strandat 161.658 kb on + strand, within ABZR87_RS16970at 161.739 kb on + strand, within ABZR87_RS16970at 161.739 kb on + strand, within ABZR87_RS16970at 161.739 kb on + strand, within ABZR87_RS16970at 161.740 kb on - strand, within ABZR87_RS16970at 161.740 kb on - strand, within ABZR87_RS16970at 161.772 kb on + strand, within ABZR87_RS16970at 161.772 kb on + strand, within ABZR87_RS16970at 161.773 kb on - strand, within ABZR87_RS16970at 161.865 kb on + strand, within ABZR87_RS16970at 161.865 kb on + strand, within ABZR87_RS16970at 161.865 kb on + strand, within ABZR87_RS16970at 161.865 kb on + strand, within ABZR87_RS16970at 161.865 kb on + strand, within ABZR87_RS16970at 161.866 kb on - strand, within ABZR87_RS16970at 161.866 kb on - strand, within ABZR87_RS16970at 161.866 kb on - strand, within ABZR87_RS16970at 161.866 kb on - strand, within ABZR87_RS16970at 161.878 kb on - strand, within ABZR87_RS16970at 161.898 kb on + strand, within ABZR87_RS16970at 161.899 kb on - strand, within ABZR87_RS16970at 161.899 kb on - strand, within ABZR87_RS16970at 161.899 kb on - strand, within ABZR87_RS16970at 162.006 kb on + strand, within ABZR87_RS16970at 162.007 kb on - strand, within ABZR87_RS16970at 162.007 kb on - strand, within ABZR87_RS16970at 162.057 kb on + strand, within ABZR87_RS16970at 162.410 kb on + strandat 162.411 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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159,781 - ABZR87_RS16960 0.36 -0.9
159,781 - ABZR87_RS16960 0.36 -1.1
160,149 + ABZR87_RS16960 0.64 -1.5
160,150 - ABZR87_RS16960 0.64 -0.0
160,224 + ABZR87_RS16960 0.69 +1.6
160,224 + ABZR87_RS16960 0.69 +1.0
160,224 + ABZR87_RS16960 0.69 -0.3
160,225 - ABZR87_RS16960 0.70 -2.7
160,731 - +0.9
160,731 - -0.2
160,744 + -1.4
160,744 + +0.1
160,744 + -0.8
160,744 + +1.2
160,750 + -1.4
160,750 + -0.6
160,750 + +2.6
160,750 + +2.4
160,750 + +0.4
160,750 + -0.3
160,750 + -0.1
160,750 + -3.1
160,750 + -2.0
160,750 + -0.2
160,751 - +1.2
160,751 - +0.1
160,751 - -0.3
160,751 - -1.0
160,751 - -1.0
160,751 - +0.7
160,751 - +0.4
160,751 - -0.3
160,751 - +0.9
160,751 - -0.4
160,787 + ABZR87_RS16965 0.14 +0.3
160,787 + ABZR87_RS16965 0.14 -0.2
160,787 + ABZR87_RS16965 0.14 -0.5
160,885 + ABZR87_RS16965 0.25 -0.4
160,946 - ABZR87_RS16965 0.32 -0.3
161,195 - ABZR87_RS16965 0.60 -0.7
161,320 + ABZR87_RS16965 0.74 +0.7
161,321 - ABZR87_RS16965 0.75 +0.2
161,321 - ABZR87_RS16965 0.75 -0.1
161,404 + ABZR87_RS16965 0.84 -0.7
161,449 + ABZR87_RS16965 0.89 -1.6
161,449 + ABZR87_RS16965 0.89 -0.7
161,449 + ABZR87_RS16965 0.89 -0.2
161,449 + ABZR87_RS16965 0.89 -1.6
161,450 - ABZR87_RS16965 0.89 -2.0
161,485 + -0.5
161,486 - -2.8
161,486 - +0.2
161,510 - +0.6
161,658 + ABZR87_RS16970 0.13 -0.5
161,739 + ABZR87_RS16970 0.22 -0.2
161,739 + ABZR87_RS16970 0.22 +0.2
161,739 + ABZR87_RS16970 0.22 +0.4
161,740 - ABZR87_RS16970 0.22 +1.7
161,740 - ABZR87_RS16970 0.22 +2.1
161,772 + ABZR87_RS16970 0.25 +3.9
161,772 + ABZR87_RS16970 0.25 -1.2
161,773 - ABZR87_RS16970 0.25 -2.0
161,865 + ABZR87_RS16970 0.35 -0.2
161,865 + ABZR87_RS16970 0.35 +1.4
161,865 + ABZR87_RS16970 0.35 -1.5
161,865 + ABZR87_RS16970 0.35 +0.7
161,865 + ABZR87_RS16970 0.35 -0.8
161,866 - ABZR87_RS16970 0.35 -1.3
161,866 - ABZR87_RS16970 0.35 -0.4
161,866 - ABZR87_RS16970 0.35 +0.3
161,866 - ABZR87_RS16970 0.35 -0.6
161,878 - ABZR87_RS16970 0.37 +1.2
161,898 + ABZR87_RS16970 0.39 -0.5
161,899 - ABZR87_RS16970 0.39 -0.1
161,899 - ABZR87_RS16970 0.39 -0.3
161,899 - ABZR87_RS16970 0.39 +1.2
162,006 + ABZR87_RS16970 0.50 -1.8
162,007 - ABZR87_RS16970 0.51 -0.2
162,007 - ABZR87_RS16970 0.51 +0.4
162,057 + ABZR87_RS16970 0.56 -1.0
162,410 + +3.5
162,411 - +1.1

Or see this region's nucleotide sequence