Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS10200

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS10190 and ABZR87_RS10195 are separated by 30 nucleotidesABZR87_RS10195 and ABZR87_RS10200 are separated by 62 nucleotidesABZR87_RS10200 and ABZR87_RS10205 are separated by 1 nucleotidesABZR87_RS10205 and ABZR87_RS10210 are separated by 7 nucleotides ABZR87_RS10190: ABZR87_RS10190 - translation elongation factor 4, at 2,161,948 to 2,163,747 _RS10190 ABZR87_RS10195: ABZR87_RS10195 - signal peptidase I, at 2,163,778 to 2,164,671 _RS10195 ABZR87_RS10200: ABZR87_RS10200 - DUF4845 domain-containing protein, at 2,164,734 to 2,165,102 _RS10200 ABZR87_RS10205: ABZR87_RS10205 - ribonuclease III, at 2,165,104 to 2,165,874 _RS10205 ABZR87_RS10210: ABZR87_RS10210 - GTPase Era, at 2,165,882 to 2,166,820 _RS10210 Position (kb) 2164 2165 2166Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2163.925 kb on + strand, within ABZR87_RS10195at 2164.003 kb on + strand, within ABZR87_RS10195at 2164.141 kb on + strand, within ABZR87_RS10195at 2164.330 kb on + strand, within ABZR87_RS10195at 2164.444 kb on + strand, within ABZR87_RS10195at 2164.490 kb on - strand, within ABZR87_RS10195at 2164.531 kb on + strand, within ABZR87_RS10195at 2164.778 kb on + strand, within ABZR87_RS10200at 2164.778 kb on + strand, within ABZR87_RS10200at 2164.863 kb on + strand, within ABZR87_RS10200at 2165.034 kb on + strand, within ABZR87_RS10200at 2165.034 kb on + strand, within ABZR87_RS10200at 2165.082 kb on + strandat 2165.082 kb on + strandat 2165.120 kb on + strandat 2165.121 kb on - strandat 2165.879 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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2,163,925 + ABZR87_RS10195 0.16 -1.3
2,164,003 + ABZR87_RS10195 0.25 -0.2
2,164,141 + ABZR87_RS10195 0.41 -0.5
2,164,330 + ABZR87_RS10195 0.62 -3.2
2,164,444 + ABZR87_RS10195 0.74 -3.8
2,164,490 - ABZR87_RS10195 0.80 -1.9
2,164,531 + ABZR87_RS10195 0.84 -2.6
2,164,778 + ABZR87_RS10200 0.12 -0.6
2,164,778 + ABZR87_RS10200 0.12 +0.5
2,164,863 + ABZR87_RS10200 0.35 -0.2
2,165,034 + ABZR87_RS10200 0.81 +0.4
2,165,034 + ABZR87_RS10200 0.81 +1.1
2,165,082 + -1.5
2,165,082 + -0.3
2,165,120 + +0.6
2,165,121 - -1.0
2,165,879 + -1.3

Or see this region's nucleotide sequence