Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08245

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08230 and ABZR87_RS08235 overlap by 2 nucleotidesABZR87_RS08235 and ABZR87_RS08240 overlap by 4 nucleotidesABZR87_RS08240 and ABZR87_RS08245 are separated by 16 nucleotidesABZR87_RS08245 and ABZR87_RS08250 are separated by 218 nucleotides ABZR87_RS08230: ABZR87_RS08230 - hypothetical protein, at 1,750,211 to 1,750,798 _RS08230 ABZR87_RS08235: ABZR87_RS08235 - hypothetical protein, at 1,750,797 to 1,751,255 _RS08235 ABZR87_RS08240: ABZR87_RS08240 - hypothetical protein, at 1,751,252 to 1,751,452 _RS08240 ABZR87_RS08245: ABZR87_RS08245 - hypothetical protein, at 1,751,469 to 1,751,810 _RS08245 ABZR87_RS08250: ABZR87_RS08250 - PLP-dependent aminotransferase family protein, at 1,752,029 to 1,753,492 _RS08250 Position (kb) 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1750.472 kb on + strand, within ABZR87_RS08230at 1750.472 kb on + strand, within ABZR87_RS08230at 1750.505 kb on + strand, within ABZR87_RS08230at 1750.505 kb on + strand, within ABZR87_RS08230at 1750.506 kb on - strand, within ABZR87_RS08230at 1750.779 kb on + strandat 1750.859 kb on + strand, within ABZR87_RS08235at 1751.654 kb on + strand, within ABZR87_RS08245at 1751.654 kb on + strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.655 kb on - strand, within ABZR87_RS08245at 1751.656 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.702 kb on + strand, within ABZR87_RS08245at 1751.703 kb on - strand, within ABZR87_RS08245at 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.838 kb on + strandat 1751.839 kb on - strandat 1751.839 kb on - strandat 1751.922 kb on + strandat 1751.923 kb on - strandat 1751.923 kb on - strandat 1751.923 kb on - strandat 1751.942 kb on - strandat 1752.072 kb on - strandat 1752.072 kb on - strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.092 kb on + strandat 1752.093 kb on - strandat 1752.198 kb on + strand, within ABZR87_RS08250at 1752.198 kb on + strand, within ABZR87_RS08250at 1752.198 kb on + strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250at 1752.199 kb on - strand, within ABZR87_RS08250at 1752.329 kb on + strand, within ABZR87_RS08250at 1752.329 kb on + strand, within ABZR87_RS08250at 1752.330 kb on - strand, within ABZR87_RS08250at 1752.330 kb on - strand, within ABZR87_RS08250at 1752.330 kb on - strand, within ABZR87_RS08250at 1752.400 kb on - strand, within ABZR87_RS08250at 1752.400 kb on - strand, within ABZR87_RS08250at 1752.428 kb on + strand, within ABZR87_RS08250at 1752.477 kb on - strand, within ABZR87_RS08250at 1752.605 kb on - strand, within ABZR87_RS08250at 1752.605 kb on - strand, within ABZR87_RS08250at 1752.652 kb on + strand, within ABZR87_RS08250at 1752.677 kb on + strand, within ABZR87_RS08250at 1752.678 kb on - strand, within ABZR87_RS08250at 1752.678 kb on - strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.680 kb on + strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250at 1752.681 kb on - strand, within ABZR87_RS08250

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,750,472 + ABZR87_RS08230 0.44 -0.1
1,750,472 + ABZR87_RS08230 0.44 +0.4
1,750,505 + ABZR87_RS08230 0.50 +0.1
1,750,505 + ABZR87_RS08230 0.50 -0.6
1,750,506 - ABZR87_RS08230 0.50 -1.0
1,750,779 + -0.1
1,750,859 + ABZR87_RS08235 0.14 -2.0
1,751,654 + ABZR87_RS08245 0.54 -0.9
1,751,654 + ABZR87_RS08245 0.54 +1.1
1,751,655 - ABZR87_RS08245 0.54 +0.5
1,751,655 - ABZR87_RS08245 0.54 -0.9
1,751,655 - ABZR87_RS08245 0.54 -0.4
1,751,655 - ABZR87_RS08245 0.54 +2.1
1,751,656 + ABZR87_RS08245 0.55 +1.9
1,751,702 + ABZR87_RS08245 0.68 +1.3
1,751,702 + ABZR87_RS08245 0.68 +0.5
1,751,702 + ABZR87_RS08245 0.68 -0.1
1,751,702 + ABZR87_RS08245 0.68 -1.4
1,751,703 - ABZR87_RS08245 0.68 -1.7
1,751,838 + -0.9
1,751,838 + +0.2
1,751,838 + -1.0
1,751,838 + +1.5
1,751,839 - +1.1
1,751,839 - -0.8
1,751,922 + +0.8
1,751,923 - +0.1
1,751,923 - -0.2
1,751,923 - +0.0
1,751,942 - -0.2
1,752,072 - +0.3
1,752,072 - +0.2
1,752,092 + -1.0
1,752,092 + -0.1
1,752,092 + +0.9
1,752,092 + -1.7
1,752,093 - -0.1
1,752,198 + ABZR87_RS08250 0.12 -0.6
1,752,198 + ABZR87_RS08250 0.12 +0.5
1,752,198 + ABZR87_RS08250 0.12 -0.7
1,752,199 - ABZR87_RS08250 0.12 +1.2
1,752,199 - ABZR87_RS08250 0.12 +2.9
1,752,199 - ABZR87_RS08250 0.12 -1.0
1,752,329 + ABZR87_RS08250 0.20 +0.8
1,752,329 + ABZR87_RS08250 0.20 +1.2
1,752,330 - ABZR87_RS08250 0.21 +0.2
1,752,330 - ABZR87_RS08250 0.21 +0.5
1,752,330 - ABZR87_RS08250 0.21 -0.5
1,752,400 - ABZR87_RS08250 0.25 -0.2
1,752,400 - ABZR87_RS08250 0.25 -1.2
1,752,428 + ABZR87_RS08250 0.27 +3.0
1,752,477 - ABZR87_RS08250 0.31 -0.5
1,752,605 - ABZR87_RS08250 0.39 -1.0
1,752,605 - ABZR87_RS08250 0.39 +1.2
1,752,652 + ABZR87_RS08250 0.43 +0.9
1,752,677 + ABZR87_RS08250 0.44 -1.2
1,752,678 - ABZR87_RS08250 0.44 +0.3
1,752,678 - ABZR87_RS08250 0.44 +0.0
1,752,680 + ABZR87_RS08250 0.44 +0.1
1,752,680 + ABZR87_RS08250 0.44 -0.7
1,752,680 + ABZR87_RS08250 0.44 -0.5
1,752,681 - ABZR87_RS08250 0.45 +1.0
1,752,681 - ABZR87_RS08250 0.45 +0.4
1,752,681 - ABZR87_RS08250 0.45 +0.5

Or see this region's nucleotide sequence