Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04365

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04360 and ABZR87_RS04365 are separated by 140 nucleotidesABZR87_RS04365 and ABZR87_RS04370 are separated by 83 nucleotides ABZR87_RS04360: ABZR87_RS04360 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 909,909 to 910,766 _RS04360 ABZR87_RS04365: ABZR87_RS04365 - polyphosphate kinase 2, at 910,907 to 911,809 _RS04365 ABZR87_RS04370: ABZR87_RS04370 - inorganic phosphate transporter, at 911,893 to 913,479 _RS04370 Position (kb) 910 911 912Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 909.918 kb on + strandat 909.918 kb on + strandat 909.918 kb on + strandat 909.990 kb on + strandat 909.991 kb on - strandat 910.020 kb on + strand, within ABZR87_RS04360at 910.020 kb on + strand, within ABZR87_RS04360at 910.020 kb on + strand, within ABZR87_RS04360at 910.021 kb on - strand, within ABZR87_RS04360at 910.021 kb on - strand, within ABZR87_RS04360at 910.021 kb on - strand, within ABZR87_RS04360at 910.050 kb on + strand, within ABZR87_RS04360at 910.050 kb on + strand, within ABZR87_RS04360at 910.161 kb on + strand, within ABZR87_RS04360at 910.161 kb on + strand, within ABZR87_RS04360at 910.210 kb on - strand, within ABZR87_RS04360at 910.342 kb on - strand, within ABZR87_RS04360at 910.342 kb on - strand, within ABZR87_RS04360at 910.441 kb on - strand, within ABZR87_RS04360at 910.441 kb on - strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.497 kb on + strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.498 kb on - strand, within ABZR87_RS04360at 910.819 kb on + strandat 910.819 kb on + strandat 910.819 kb on + strandat 910.819 kb on + strandat 910.820 kb on - strandat 910.820 kb on - strandat 910.820 kb on - strandat 910.820 kb on - strandat 910.823 kb on + strandat 910.824 kb on - strandat 910.824 kb on - strandat 910.833 kb on + strandat 910.834 kb on - strandat 910.834 kb on - strandat 910.834 kb on - strandat 911.054 kb on + strand, within ABZR87_RS04365at 911.054 kb on + strand, within ABZR87_RS04365at 911.055 kb on - strand, within ABZR87_RS04365at 911.055 kb on - strand, within ABZR87_RS04365at 911.055 kb on - strand, within ABZR87_RS04365at 911.143 kb on - strand, within ABZR87_RS04365at 911.264 kb on + strand, within ABZR87_RS04365at 911.265 kb on - strand, within ABZR87_RS04365at 911.265 kb on - strand, within ABZR87_RS04365at 911.276 kb on + strand, within ABZR87_RS04365at 911.276 kb on + strand, within ABZR87_RS04365at 911.276 kb on + strand, within ABZR87_RS04365at 911.277 kb on - strand, within ABZR87_RS04365at 911.280 kb on + strand, within ABZR87_RS04365at 911.280 kb on + strand, within ABZR87_RS04365at 911.280 kb on + strand, within ABZR87_RS04365at 911.281 kb on - strand, within ABZR87_RS04365at 911.330 kb on + strand, within ABZR87_RS04365at 911.331 kb on - strand, within ABZR87_RS04365at 911.381 kb on + strand, within ABZR87_RS04365at 911.381 kb on + strand, within ABZR87_RS04365at 911.453 kb on + strand, within ABZR87_RS04365at 911.454 kb on - strand, within ABZR87_RS04365at 911.573 kb on + strand, within ABZR87_RS04365at 911.573 kb on + strand, within ABZR87_RS04365at 911.573 kb on + strand, within ABZR87_RS04365at 911.574 kb on - strand, within ABZR87_RS04365at 911.574 kb on - strand, within ABZR87_RS04365at 911.574 kb on - strand, within ABZR87_RS04365at 911.574 kb on - strand, within ABZR87_RS04365at 911.575 kb on + strand, within ABZR87_RS04365at 911.576 kb on - strand, within ABZR87_RS04365at 911.576 kb on - strand, within ABZR87_RS04365at 911.702 kb on + strand, within ABZR87_RS04365at 911.702 kb on + strand, within ABZR87_RS04365at 911.703 kb on - strand, within ABZR87_RS04365at 911.759 kb on + strandat 911.759 kb on + strandat 911.759 kb on + strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.760 kb on - strandat 911.804 kb on + strandat 911.890 kb on + strandat 911.918 kb on + strandat 911.919 kb on - strandat 911.919 kb on - strandat 911.919 kb on - strandat 911.988 kb on + strandat 911.989 kb on - strandat 911.989 kb on - strandat 912.074 kb on + strand, within ABZR87_RS04370at 912.074 kb on + strand, within ABZR87_RS04370at 912.074 kb on + strand, within ABZR87_RS04370at 912.074 kb on + strand, within ABZR87_RS04370at 912.074 kb on + strand, within ABZR87_RS04370at 912.075 kb on - strand, within ABZR87_RS04370at 912.075 kb on - strand, within ABZR87_RS04370at 912.075 kb on - strand, within ABZR87_RS04370at 912.075 kb on - strand, within ABZR87_RS04370at 912.134 kb on + strand, within ABZR87_RS04370at 912.134 kb on + strand, within ABZR87_RS04370at 912.134 kb on + strand, within ABZR87_RS04370at 912.281 kb on + strand, within ABZR87_RS04370at 912.281 kb on + strand, within ABZR87_RS04370at 912.282 kb on - strand, within ABZR87_RS04370at 912.282 kb on - strand, within ABZR87_RS04370at 912.282 kb on - strand, within ABZR87_RS04370at 912.282 kb on - strand, within ABZR87_RS04370at 912.282 kb on - strand, within ABZR87_RS04370at 912.282 kb on - strand, within ABZR87_RS04370at 912.282 kb on - strand, within ABZR87_RS04370at 912.282 kb on - strand, within ABZR87_RS04370at 912.365 kb on + strand, within ABZR87_RS04370at 912.365 kb on + strand, within ABZR87_RS04370at 912.365 kb on + strand, within ABZR87_RS04370at 912.365 kb on + strand, within ABZR87_RS04370at 912.366 kb on - strand, within ABZR87_RS04370at 912.366 kb on - strand, within ABZR87_RS04370at 912.366 kb on - strand, within ABZR87_RS04370at 912.366 kb on - strand, within ABZR87_RS04370at 912.366 kb on - strand, within ABZR87_RS04370at 912.506 kb on + strand, within ABZR87_RS04370at 912.506 kb on + strand, within ABZR87_RS04370at 912.506 kb on + strand, within ABZR87_RS04370at 912.506 kb on + strand, within ABZR87_RS04370at 912.506 kb on + strand, within ABZR87_RS04370at 912.507 kb on - strand, within ABZR87_RS04370at 912.507 kb on - strand, within ABZR87_RS04370at 912.507 kb on - strand, within ABZR87_RS04370at 912.507 kb on - strand, within ABZR87_RS04370at 912.507 kb on - strand, within ABZR87_RS04370at 912.507 kb on - strand, within ABZR87_RS04370at 912.557 kb on + strand, within ABZR87_RS04370at 912.557 kb on + strand, within ABZR87_RS04370at 912.558 kb on - strand, within ABZR87_RS04370at 912.558 kb on - strand, within ABZR87_RS04370at 912.558 kb on - strand, within ABZR87_RS04370at 912.558 kb on - strand, within ABZR87_RS04370at 912.558 kb on - strand, within ABZR87_RS04370at 912.797 kb on + strand, within ABZR87_RS04370at 912.798 kb on - strand, within ABZR87_RS04370at 912.798 kb on - strand, within ABZR87_RS04370

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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909,918 + +0.9
909,918 + -0.6
909,918 + -0.3
909,990 + -0.2
909,991 - -0.7
910,020 + ABZR87_RS04360 0.13 +1.4
910,020 + ABZR87_RS04360 0.13 -1.2
910,020 + ABZR87_RS04360 0.13 +0.2
910,021 - ABZR87_RS04360 0.13 +0.4
910,021 - ABZR87_RS04360 0.13 +0.8
910,021 - ABZR87_RS04360 0.13 -1.8
910,050 + ABZR87_RS04360 0.16 -0.8
910,050 + ABZR87_RS04360 0.16 +0.0
910,161 + ABZR87_RS04360 0.29 +2.7
910,161 + ABZR87_RS04360 0.29 -0.7
910,210 - ABZR87_RS04360 0.35 -1.2
910,342 - ABZR87_RS04360 0.50 +1.2
910,342 - ABZR87_RS04360 0.50 -0.9
910,441 - ABZR87_RS04360 0.62 -2.9
910,441 - ABZR87_RS04360 0.62 -1.3
910,497 + ABZR87_RS04360 0.69 -0.3
910,497 + ABZR87_RS04360 0.69 +0.3
910,497 + ABZR87_RS04360 0.69 +0.8
910,497 + ABZR87_RS04360 0.69 +0.3
910,497 + ABZR87_RS04360 0.69 -1.2
910,497 + ABZR87_RS04360 0.69 +0.3
910,497 + ABZR87_RS04360 0.69 +0.8
910,497 + ABZR87_RS04360 0.69 -0.2
910,498 - ABZR87_RS04360 0.69 +0.5
910,498 - ABZR87_RS04360 0.69 +1.3
910,498 - ABZR87_RS04360 0.69 -1.9
910,498 - ABZR87_RS04360 0.69 -0.7
910,498 - ABZR87_RS04360 0.69 -0.4
910,498 - ABZR87_RS04360 0.69 +0.2
910,498 - ABZR87_RS04360 0.69 -1.6
910,819 + -0.7
910,819 + +0.1
910,819 + +0.8
910,819 + -1.0
910,820 - -1.4
910,820 - +0.1
910,820 - +4.5
910,820 - -0.3
910,823 + +1.7
910,824 - +0.4
910,824 - -2.6
910,833 + +0.7
910,834 - -0.9
910,834 - -1.2
910,834 - -0.3
911,054 + ABZR87_RS04365 0.16 -0.8
911,054 + ABZR87_RS04365 0.16 +0.3
911,055 - ABZR87_RS04365 0.16 +0.3
911,055 - ABZR87_RS04365 0.16 +0.1
911,055 - ABZR87_RS04365 0.16 +1.3
911,143 - ABZR87_RS04365 0.26 -0.1
911,264 + ABZR87_RS04365 0.40 +2.0
911,265 - ABZR87_RS04365 0.40 -1.2
911,265 - ABZR87_RS04365 0.40 -0.2
911,276 + ABZR87_RS04365 0.41 +0.8
911,276 + ABZR87_RS04365 0.41 +0.2
911,276 + ABZR87_RS04365 0.41 +0.9
911,277 - ABZR87_RS04365 0.41 +0.5
911,280 + ABZR87_RS04365 0.41 -0.3
911,280 + ABZR87_RS04365 0.41 -0.5
911,280 + ABZR87_RS04365 0.41 +0.1
911,281 - ABZR87_RS04365 0.41 -1.4
911,330 + ABZR87_RS04365 0.47 -0.3
911,331 - ABZR87_RS04365 0.47 -0.3
911,381 + ABZR87_RS04365 0.52 -1.4
911,381 + ABZR87_RS04365 0.52 -1.7
911,453 + ABZR87_RS04365 0.60 -0.4
911,454 - ABZR87_RS04365 0.61 +0.8
911,573 + ABZR87_RS04365 0.74 +0.3
911,573 + ABZR87_RS04365 0.74 -0.3
911,573 + ABZR87_RS04365 0.74 -0.5
911,574 - ABZR87_RS04365 0.74 +0.2
911,574 - ABZR87_RS04365 0.74 +0.2
911,574 - ABZR87_RS04365 0.74 +0.4
911,574 - ABZR87_RS04365 0.74 -2.0
911,575 + ABZR87_RS04365 0.74 +0.9
911,576 - ABZR87_RS04365 0.74 +0.4
911,576 - ABZR87_RS04365 0.74 -0.9
911,702 + ABZR87_RS04365 0.88 +0.7
911,702 + ABZR87_RS04365 0.88 -1.1
911,703 - ABZR87_RS04365 0.88 +0.5
911,759 + -0.5
911,759 + +2.7
911,759 + +1.2
911,760 - +1.1
911,760 - +0.1
911,760 - -0.1
911,760 - +0.3
911,760 - -0.5
911,760 - +0.5
911,804 + +1.3
911,890 + -0.9
911,918 + +0.4
911,919 - +0.8
911,919 - +1.3
911,919 - -0.5
911,988 + -1.2
911,989 - +1.2
911,989 - +1.2
912,074 + ABZR87_RS04370 0.11 -0.2
912,074 + ABZR87_RS04370 0.11 +0.4
912,074 + ABZR87_RS04370 0.11 +0.6
912,074 + ABZR87_RS04370 0.11 +0.8
912,074 + ABZR87_RS04370 0.11 -1.5
912,075 - ABZR87_RS04370 0.11 -0.8
912,075 - ABZR87_RS04370 0.11 +2.2
912,075 - ABZR87_RS04370 0.11 +0.7
912,075 - ABZR87_RS04370 0.11 -0.5
912,134 + ABZR87_RS04370 0.15 +0.5
912,134 + ABZR87_RS04370 0.15 -0.2
912,134 + ABZR87_RS04370 0.15 +1.1
912,281 + ABZR87_RS04370 0.24 +0.4
912,281 + ABZR87_RS04370 0.24 -1.1
912,282 - ABZR87_RS04370 0.25 +1.8
912,282 - ABZR87_RS04370 0.25 -0.9
912,282 - ABZR87_RS04370 0.25 -0.8
912,282 - ABZR87_RS04370 0.25 +0.3
912,282 - ABZR87_RS04370 0.25 -0.3
912,282 - ABZR87_RS04370 0.25 -1.0
912,282 - ABZR87_RS04370 0.25 -1.4
912,282 - ABZR87_RS04370 0.25 +1.0
912,365 + ABZR87_RS04370 0.30 +1.1
912,365 + ABZR87_RS04370 0.30 +0.6
912,365 + ABZR87_RS04370 0.30 -0.3
912,365 + ABZR87_RS04370 0.30 +0.7
912,366 - ABZR87_RS04370 0.30 +0.5
912,366 - ABZR87_RS04370 0.30 +0.4
912,366 - ABZR87_RS04370 0.30 +0.1
912,366 - ABZR87_RS04370 0.30 -2.5
912,366 - ABZR87_RS04370 0.30 -0.1
912,506 + ABZR87_RS04370 0.39 -0.8
912,506 + ABZR87_RS04370 0.39 +0.5
912,506 + ABZR87_RS04370 0.39 +0.6
912,506 + ABZR87_RS04370 0.39 -0.5
912,506 + ABZR87_RS04370 0.39 +0.1
912,507 - ABZR87_RS04370 0.39 -3.4
912,507 - ABZR87_RS04370 0.39 +2.0
912,507 - ABZR87_RS04370 0.39 -0.7
912,507 - ABZR87_RS04370 0.39 +2.1
912,507 - ABZR87_RS04370 0.39 +1.6
912,507 - ABZR87_RS04370 0.39 -1.7
912,557 + ABZR87_RS04370 0.42 -0.5
912,557 + ABZR87_RS04370 0.42 -2.2
912,558 - ABZR87_RS04370 0.42 +0.1
912,558 - ABZR87_RS04370 0.42 -0.2
912,558 - ABZR87_RS04370 0.42 +0.4
912,558 - ABZR87_RS04370 0.42 +1.3
912,558 - ABZR87_RS04370 0.42 +0.4
912,797 + ABZR87_RS04370 0.57 +1.1
912,798 - ABZR87_RS04370 0.57 -0.6
912,798 - ABZR87_RS04370 0.57 +0.3

Or see this region's nucleotide sequence