Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03940 and ABZR87_RS03945 are separated by 650 nucleotides ABZR87_RS03945 and ABZR87_RS03950 are separated by 14 nucleotides ABZR87_RS03950 and ABZR87_RS03955 are separated by 21 nucleotides
ABZR87_RS03940: ABZR87_RS03940 - L-serine ammonia-lyase, at 819,517 to 820,893
_RS03940
ABZR87_RS03945: ABZR87_RS03945 - oligopeptide transporter, OPT family, at 821,544 to 823,598
_RS03945
ABZR87_RS03950: ABZR87_RS03950 - GNAT family N-acetyltransferase, at 823,613 to 824,128
_RS03950
ABZR87_RS03955: ABZR87_RS03955 - YbdK family carboxylate-amine ligase, at 824,150 to 825,283
_RS03955
Position (kb) 821
822
823
824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 820.704 kb on + strand, within ABZR87_RS03940 at 820.704 kb on + strand, within ABZR87_RS03940 at 820.704 kb on + strand, within ABZR87_RS03940 at 820.704 kb on + strand, within ABZR87_RS03940 at 820.705 kb on - strand, within ABZR87_RS03940 at 820.705 kb on - strand, within ABZR87_RS03940 at 820.705 kb on - strand, within ABZR87_RS03940 at 820.705 kb on - strand, within ABZR87_RS03940 at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.780 kb on + strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.781 kb on - strand at 820.830 kb on + strand at 820.831 kb on - strand at 820.831 kb on - strand at 820.831 kb on - strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.843 kb on + strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.844 kb on - strand at 820.878 kb on + strand at 820.878 kb on + strand at 820.878 kb on + strand at 820.879 kb on - strand at 821.236 kb on - strand at 821.236 kb on - strand at 821.454 kb on + strand at 821.455 kb on - strand at 821.503 kb on + strand at 821.503 kb on + strand at 821.503 kb on + strand at 821.503 kb on + strand at 821.503 kb on + strand at 821.504 kb on - strand at 821.504 kb on - strand at 821.505 kb on + strand at 821.505 kb on + strand at 821.506 kb on - strand at 821.602 kb on + strand at 821.643 kb on - strand at 821.658 kb on + strand at 821.658 kb on + strand at 821.659 kb on - strand at 821.659 kb on - strand at 821.659 kb on - strand at 822.106 kb on + strand, within ABZR87_RS03945 at 822.106 kb on + strand, within ABZR87_RS03945 at 822.106 kb on + strand, within ABZR87_RS03945 at 822.107 kb on - strand, within ABZR87_RS03945 at 822.107 kb on - strand, within ABZR87_RS03945 at 822.107 kb on - strand, within ABZR87_RS03945 at 822.225 kb on + strand, within ABZR87_RS03945 at 822.226 kb on - strand, within ABZR87_RS03945 at 822.226 kb on - strand, within ABZR87_RS03945 at 822.297 kb on + strand, within ABZR87_RS03945 at 822.297 kb on + strand, within ABZR87_RS03945 at 822.297 kb on + strand, within ABZR87_RS03945 at 822.298 kb on - strand, within ABZR87_RS03945 at 822.380 kb on + strand, within ABZR87_RS03945 at 822.691 kb on - strand, within ABZR87_RS03945 at 823.011 kb on + strand, within ABZR87_RS03945 at 823.011 kb on + strand, within ABZR87_RS03945 at 823.012 kb on - strand, within ABZR87_RS03945 at 823.012 kb on - strand, within ABZR87_RS03945 at 823.012 kb on - strand, within ABZR87_RS03945 at 823.012 kb on - strand, within ABZR87_RS03945 at 823.020 kb on + strand, within ABZR87_RS03945 at 823.020 kb on + strand, within ABZR87_RS03945 at 823.020 kb on + strand, within ABZR87_RS03945 at 823.021 kb on - strand, within ABZR87_RS03945 at 823.021 kb on - strand, within ABZR87_RS03945 at 823.021 kb on - strand, within ABZR87_RS03945 at 823.254 kb on + strand, within ABZR87_RS03945 at 823.254 kb on + strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.255 kb on - strand, within ABZR87_RS03945 at 823.352 kb on - strand, within ABZR87_RS03945 at 823.356 kb on + strand, within ABZR87_RS03945 at 823.357 kb on - strand, within ABZR87_RS03945 at 823.357 kb on - strand, within ABZR87_RS03945 at 823.357 kb on - strand, within ABZR87_RS03945 at 823.357 kb on - strand, within ABZR87_RS03945 at 823.366 kb on - strand, within ABZR87_RS03945 at 823.366 kb on - strand, within ABZR87_RS03945 at 823.438 kb on + strand at 823.439 kb on - strand at 823.439 kb on - strand at 823.439 kb on - strand at 823.439 kb on - strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.549 kb on + strand at 823.550 kb on - strand at 823.550 kb on - strand at 823.550 kb on - strand at 823.664 kb on + strand at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.665 kb on - strand, within ABZR87_RS03950 at 823.698 kb on - strand, within ABZR87_RS03950 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.397 kb on + strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.398 kb on - strand, within ABZR87_RS03955 at 824.445 kb on + strand, within ABZR87_RS03955 at 824.446 kb on - strand, within ABZR87_RS03955 at 824.454 kb on + strand, within ABZR87_RS03955 at 824.454 kb on + strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.455 kb on - strand, within ABZR87_RS03955 at 824.515 kb on + strand, within ABZR87_RS03955 at 824.515 kb on + strand, within ABZR87_RS03955 at 824.516 kb on - strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.517 kb on + strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955 at 824.518 kb on - strand, within ABZR87_RS03955
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 820,704 + ABZR87_RS03940 0.86 -0.2 820,704 + ABZR87_RS03940 0.86 -0.3 820,704 + ABZR87_RS03940 0.86 -0.1 820,704 + ABZR87_RS03940 0.86 +0.7 820,705 - ABZR87_RS03940 0.86 +0.1 820,705 - ABZR87_RS03940 0.86 -0.9 820,705 - ABZR87_RS03940 0.86 -1.3 820,705 - ABZR87_RS03940 0.86 +5.0 820,780 + +0.3 820,780 + -0.2 820,780 + -0.2 820,780 + -0.1 820,780 + +1.6 820,780 + -0.3 820,780 + +1.8 820,780 + -0.5 820,780 + +0.6 820,780 + -0.6 820,780 + -0.9 820,781 - -0.9 820,781 - +0.3 820,781 - -1.1 820,781 - +0.2 820,781 - -0.7 820,781 - -0.3 820,781 - -0.4 820,781 - -0.1 820,781 - -0.8 820,781 - -0.4 820,781 - -0.0 820,830 + +0.7 820,831 - +0.8 820,831 - +0.9 820,831 - -0.3 820,843 + +0.5 820,843 + -0.5 820,843 + +0.1 820,843 + +1.1 820,843 + +0.6 820,843 + +0.1 820,843 + +1.2 820,844 - +0.3 820,844 - +0.4 820,844 - +0.1 820,844 - -0.1 820,844 - +0.3 820,844 - -1.6 820,878 + +0.7 820,878 + -0.7 820,878 + +0.8 820,879 - +0.2 821,236 - +1.2 821,236 - -0.1 821,454 + +1.1 821,455 - -0.8 821,503 + -0.4 821,503 + -0.1 821,503 + +0.3 821,503 + -0.1 821,503 + +0.7 821,504 - +1.2 821,504 - -1.0 821,505 + +0.7 821,505 + -0.4 821,506 - +0.4 821,602 + -1.6 821,643 - -0.2 821,658 + -1.0 821,658 + -1.1 821,659 - +0.2 821,659 - +1.7 821,659 - -0.4 822,106 + ABZR87_RS03945 0.27 +0.7 822,106 + ABZR87_RS03945 0.27 +2.0 822,106 + ABZR87_RS03945 0.27 +1.7 822,107 - ABZR87_RS03945 0.27 -1.5 822,107 - ABZR87_RS03945 0.27 -0.5 822,107 - ABZR87_RS03945 0.27 -1.0 822,225 + ABZR87_RS03945 0.33 -1.5 822,226 - ABZR87_RS03945 0.33 +0.7 822,226 - ABZR87_RS03945 0.33 -1.4 822,297 + ABZR87_RS03945 0.37 -0.6 822,297 + ABZR87_RS03945 0.37 -0.3 822,297 + ABZR87_RS03945 0.37 -1.4 822,298 - ABZR87_RS03945 0.37 -0.3 822,380 + ABZR87_RS03945 0.41 -0.1 822,691 - ABZR87_RS03945 0.56 +0.0 823,011 + ABZR87_RS03945 0.71 +0.2 823,011 + ABZR87_RS03945 0.71 -0.2 823,012 - ABZR87_RS03945 0.71 -0.1 823,012 - ABZR87_RS03945 0.71 -0.2 823,012 - ABZR87_RS03945 0.71 -0.1 823,012 - ABZR87_RS03945 0.71 -0.6 823,020 + ABZR87_RS03945 0.72 +0.4 823,020 + ABZR87_RS03945 0.72 +2.1 823,020 + ABZR87_RS03945 0.72 +1.1 823,021 - ABZR87_RS03945 0.72 -1.2 823,021 - ABZR87_RS03945 0.72 -0.2 823,021 - ABZR87_RS03945 0.72 +0.2 823,254 + ABZR87_RS03945 0.83 -1.4 823,254 + ABZR87_RS03945 0.83 -3.0 823,255 - ABZR87_RS03945 0.83 +1.3 823,255 - ABZR87_RS03945 0.83 -0.2 823,255 - ABZR87_RS03945 0.83 -0.3 823,255 - ABZR87_RS03945 0.83 -1.3 823,255 - ABZR87_RS03945 0.83 -0.1 823,255 - ABZR87_RS03945 0.83 -0.8 823,255 - ABZR87_RS03945 0.83 -0.2 823,255 - ABZR87_RS03945 0.83 +0.7 823,255 - ABZR87_RS03945 0.83 -0.9 823,352 - ABZR87_RS03945 0.88 -0.8 823,356 + ABZR87_RS03945 0.88 +1.0 823,357 - ABZR87_RS03945 0.88 +0.0 823,357 - ABZR87_RS03945 0.88 -0.9 823,357 - ABZR87_RS03945 0.88 +1.3 823,357 - ABZR87_RS03945 0.88 -0.4 823,366 - ABZR87_RS03945 0.89 +1.1 823,366 - ABZR87_RS03945 0.89 -0.5 823,438 + -2.3 823,439 - -0.3 823,439 - -1.7 823,439 - -1.1 823,439 - +0.5 823,549 + -1.3 823,549 + -1.4 823,549 + +3.2 823,549 + -1.2 823,549 + +1.3 823,549 + +2.7 823,549 + -2.5 823,549 + -0.4 823,549 + +0.4 823,549 + -1.2 823,550 - +0.2 823,550 - +1.1 823,550 - +0.3 823,664 + -0.3 823,665 - ABZR87_RS03950 0.10 +0.4 823,665 - ABZR87_RS03950 0.10 -0.1 823,665 - ABZR87_RS03950 0.10 -0.4 823,665 - ABZR87_RS03950 0.10 -1.7 823,665 - ABZR87_RS03950 0.10 -0.1 823,665 - ABZR87_RS03950 0.10 -0.7 823,698 - ABZR87_RS03950 0.16 -1.3 824,397 + ABZR87_RS03955 0.22 -0.2 824,397 + ABZR87_RS03955 0.22 +0.9 824,397 + ABZR87_RS03955 0.22 +0.9 824,398 - ABZR87_RS03955 0.22 -1.0 824,398 - ABZR87_RS03955 0.22 -0.1 824,398 - ABZR87_RS03955 0.22 -0.0 824,398 - ABZR87_RS03955 0.22 -1.0 824,445 + ABZR87_RS03955 0.26 -0.8 824,446 - ABZR87_RS03955 0.26 -1.2 824,454 + ABZR87_RS03955 0.27 -1.0 824,454 + ABZR87_RS03955 0.27 +1.3 824,455 - ABZR87_RS03955 0.27 +0.6 824,455 - ABZR87_RS03955 0.27 -0.6 824,455 - ABZR87_RS03955 0.27 -1.0 824,455 - ABZR87_RS03955 0.27 -0.8 824,515 + ABZR87_RS03955 0.32 +0.7 824,515 + ABZR87_RS03955 0.32 -1.2 824,516 - ABZR87_RS03955 0.32 +0.0 824,517 + ABZR87_RS03955 0.32 -0.9 824,517 + ABZR87_RS03955 0.32 +0.7 824,517 + ABZR87_RS03955 0.32 +0.1 824,517 + ABZR87_RS03955 0.32 -0.0 824,517 + ABZR87_RS03955 0.32 -0.4 824,517 + ABZR87_RS03955 0.32 -0.6 824,517 + ABZR87_RS03955 0.32 +0.5 824,518 - ABZR87_RS03955 0.32 +0.5 824,518 - ABZR87_RS03955 0.32 -0.2 824,518 - ABZR87_RS03955 0.32 -1.9
Or see this region's nucleotide sequence