Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03930

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03925 and ABZR87_RS03930 are separated by 47 nucleotidesABZR87_RS03930 and ABZR87_RS03935 are separated by 84 nucleotides ABZR87_RS03925: ABZR87_RS03925 - glycine cleavage system aminomethyltransferase GcvT, at 814,788 to 815,915 _RS03925 ABZR87_RS03930: ABZR87_RS03930 - glycine cleavage system protein GcvH, at 815,963 to 816,343 _RS03930 ABZR87_RS03935: ABZR87_RS03935 - aminomethyl-transferring glycine dehydrogenase, at 816,428 to 819,367 _RS03935 Position (kb) 815 816 817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 815.043 kb on + strand, within ABZR87_RS03925at 815.043 kb on + strand, within ABZR87_RS03925at 815.043 kb on + strand, within ABZR87_RS03925at 815.043 kb on + strand, within ABZR87_RS03925at 815.043 kb on + strand, within ABZR87_RS03925at 815.044 kb on - strand, within ABZR87_RS03925at 815.044 kb on - strand, within ABZR87_RS03925at 815.094 kb on + strand, within ABZR87_RS03925at 815.094 kb on + strand, within ABZR87_RS03925at 815.094 kb on + strand, within ABZR87_RS03925at 815.095 kb on - strand, within ABZR87_RS03925at 815.290 kb on - strand, within ABZR87_RS03925at 815.290 kb on - strand, within ABZR87_RS03925at 815.290 kb on - strand, within ABZR87_RS03925at 815.290 kb on - strand, within ABZR87_RS03925at 815.397 kb on + strand, within ABZR87_RS03925at 815.398 kb on - strand, within ABZR87_RS03925at 815.830 kb on + strandat 815.830 kb on + strandat 815.831 kb on - strandat 815.831 kb on - strandat 815.831 kb on - strandat 815.831 kb on - strandat 815.831 kb on - strandat 815.831 kb on - strandat 815.831 kb on - strandat 815.873 kb on + strandat 815.874 kb on - strandat 815.874 kb on - strandat 815.938 kb on + strandat 815.938 kb on + strandat 815.938 kb on + strandat 815.938 kb on + strandat 815.939 kb on - strandat 815.939 kb on - strandat 815.990 kb on + strandat 815.990 kb on + strandat 815.991 kb on - strandat 815.991 kb on - strandat 815.991 kb on - strandat 815.991 kb on - strandat 816.251 kb on + strand, within ABZR87_RS03930at 816.251 kb on + strand, within ABZR87_RS03930at 816.252 kb on - strand, within ABZR87_RS03930at 816.323 kb on + strandat 816.324 kb on - strandat 816.324 kb on - strandat 816.569 kb on + strandat 816.569 kb on + strandat 816.569 kb on + strandat 816.570 kb on - strandat 816.740 kb on + strand, within ABZR87_RS03935at 816.741 kb on - strand, within ABZR87_RS03935at 816.741 kb on - strand, within ABZR87_RS03935at 816.741 kb on - strand, within ABZR87_RS03935at 816.741 kb on - strand, within ABZR87_RS03935at 816.741 kb on - strand, within ABZR87_RS03935at 816.743 kb on + strand, within ABZR87_RS03935at 816.743 kb on + strand, within ABZR87_RS03935at 816.744 kb on - strand, within ABZR87_RS03935at 816.744 kb on - strand, within ABZR87_RS03935at 816.800 kb on + strand, within ABZR87_RS03935at 816.809 kb on + strand, within ABZR87_RS03935at 816.809 kb on + strand, within ABZR87_RS03935at 816.809 kb on + strand, within ABZR87_RS03935at 816.810 kb on - strand, within ABZR87_RS03935at 816.810 kb on - strand, within ABZR87_RS03935at 816.810 kb on - strand, within ABZR87_RS03935at 816.810 kb on - strand, within ABZR87_RS03935at 817.124 kb on + strand, within ABZR87_RS03935at 817.125 kb on - strand, within ABZR87_RS03935at 817.166 kb on + strand, within ABZR87_RS03935at 817.166 kb on + strand, within ABZR87_RS03935at 817.167 kb on - strand, within ABZR87_RS03935at 817.337 kb on + strand, within ABZR87_RS03935at 817.338 kb on - strand, within ABZR87_RS03935at 817.338 kb on - strand, within ABZR87_RS03935at 817.338 kb on - strand, within ABZR87_RS03935at 817.338 kb on - strand, within ABZR87_RS03935

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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815,043 + ABZR87_RS03925 0.23 +0.7
815,043 + ABZR87_RS03925 0.23 +0.3
815,043 + ABZR87_RS03925 0.23 -1.9
815,043 + ABZR87_RS03925 0.23 +0.1
815,043 + ABZR87_RS03925 0.23 -0.5
815,044 - ABZR87_RS03925 0.23 +0.3
815,044 - ABZR87_RS03925 0.23 -2.9
815,094 + ABZR87_RS03925 0.27 -0.5
815,094 + ABZR87_RS03925 0.27 +0.7
815,094 + ABZR87_RS03925 0.27 -0.1
815,095 - ABZR87_RS03925 0.27 +0.7
815,290 - ABZR87_RS03925 0.45 +0.3
815,290 - ABZR87_RS03925 0.45 -0.3
815,290 - ABZR87_RS03925 0.45 +3.7
815,290 - ABZR87_RS03925 0.45 -2.2
815,397 + ABZR87_RS03925 0.54 +0.2
815,398 - ABZR87_RS03925 0.54 -2.3
815,830 + -0.4
815,830 + +0.1
815,831 - -0.1
815,831 - -1.2
815,831 - -1.5
815,831 - +0.1
815,831 - -1.4
815,831 - -0.2
815,831 - -0.8
815,873 + -1.2
815,874 - -1.6
815,874 - +0.6
815,938 + +0.7
815,938 + +0.0
815,938 + -1.3
815,938 + +0.1
815,939 - +0.2
815,939 - +1.7
815,990 + -2.1
815,990 + +0.3
815,991 - -1.3
815,991 - +0.7
815,991 - -0.0
815,991 - +2.3
816,251 + ABZR87_RS03930 0.76 +3.5
816,251 + ABZR87_RS03930 0.76 +0.8
816,252 - ABZR87_RS03930 0.76 -1.5
816,323 + -2.6
816,324 - -0.4
816,324 - +0.2
816,569 + +0.3
816,569 + +0.9
816,569 + +1.7
816,570 - -0.5
816,740 + ABZR87_RS03935 0.11 -0.5
816,741 - ABZR87_RS03935 0.11 +3.4
816,741 - ABZR87_RS03935 0.11 +0.2
816,741 - ABZR87_RS03935 0.11 +0.5
816,741 - ABZR87_RS03935 0.11 -1.2
816,741 - ABZR87_RS03935 0.11 -0.3
816,743 + ABZR87_RS03935 0.11 +0.8
816,743 + ABZR87_RS03935 0.11 -0.1
816,744 - ABZR87_RS03935 0.11 +0.3
816,744 - ABZR87_RS03935 0.11 +0.0
816,800 + ABZR87_RS03935 0.13 -1.3
816,809 + ABZR87_RS03935 0.13 +0.3
816,809 + ABZR87_RS03935 0.13 -0.5
816,809 + ABZR87_RS03935 0.13 -0.2
816,810 - ABZR87_RS03935 0.13 +0.8
816,810 - ABZR87_RS03935 0.13 -1.7
816,810 - ABZR87_RS03935 0.13 +1.1
816,810 - ABZR87_RS03935 0.13 +0.8
817,124 + ABZR87_RS03935 0.24 +0.2
817,125 - ABZR87_RS03935 0.24 -1.3
817,166 + ABZR87_RS03935 0.25 -0.1
817,166 + ABZR87_RS03935 0.25 -1.5
817,167 - ABZR87_RS03935 0.25 +0.3
817,337 + ABZR87_RS03935 0.31 -0.1
817,338 - ABZR87_RS03935 0.31 -0.1
817,338 - ABZR87_RS03935 0.31 -1.0
817,338 - ABZR87_RS03935 0.31 -0.6
817,338 - ABZR87_RS03935 0.31 +0.2

Or see this region's nucleotide sequence