Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03715

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03710 and ABZR87_RS03715 are separated by 91 nucleotidesABZR87_RS03715 and ABZR87_RS03720 are separated by 46 nucleotides ABZR87_RS03710: ABZR87_RS03710 - Hsp70 family protein, at 771,364 to 772,617 _RS03710 ABZR87_RS03715: ABZR87_RS03715 - NADPH-dependent FMN reductase, at 772,709 to 773,275 _RS03715 ABZR87_RS03720: ABZR87_RS03720 - hypothetical protein, at 773,322 to 773,690 _RS03720 Position (kb) 772 773 774Strain fitness (log2 ratio) -2 -1 0 1 2at 771.839 kb on - strand, within ABZR87_RS03710at 771.839 kb on - strand, within ABZR87_RS03710at 771.865 kb on + strand, within ABZR87_RS03710at 771.865 kb on + strand, within ABZR87_RS03710at 771.866 kb on - strand, within ABZR87_RS03710at 771.921 kb on + strand, within ABZR87_RS03710at 771.922 kb on - strand, within ABZR87_RS03710at 771.922 kb on - strand, within ABZR87_RS03710at 772.064 kb on + strand, within ABZR87_RS03710at 772.117 kb on + strand, within ABZR87_RS03710at 772.118 kb on - strand, within ABZR87_RS03710at 772.156 kb on + strand, within ABZR87_RS03710at 772.156 kb on + strand, within ABZR87_RS03710at 772.156 kb on + strand, within ABZR87_RS03710at 772.157 kb on - strand, within ABZR87_RS03710at 772.157 kb on - strand, within ABZR87_RS03710at 772.157 kb on - strand, within ABZR87_RS03710at 772.157 kb on - strand, within ABZR87_RS03710at 772.157 kb on - strand, within ABZR87_RS03710at 772.193 kb on - strand, within ABZR87_RS03710at 772.193 kb on - strand, within ABZR87_RS03710at 772.193 kb on - strand, within ABZR87_RS03710at 772.193 kb on - strand, within ABZR87_RS03710at 772.193 kb on - strand, within ABZR87_RS03710at 772.193 kb on - strand, within ABZR87_RS03710at 772.468 kb on - strand, within ABZR87_RS03710at 772.695 kb on + strandat 772.764 kb on + strandat 772.765 kb on - strandat 772.765 kb on - strandat 772.793 kb on - strand, within ABZR87_RS03715at 772.806 kb on + strand, within ABZR87_RS03715at 772.807 kb on - strand, within ABZR87_RS03715at 772.812 kb on + strand, within ABZR87_RS03715at 772.812 kb on + strand, within ABZR87_RS03715at 772.812 kb on + strand, within ABZR87_RS03715at 772.812 kb on + strand, within ABZR87_RS03715at 772.812 kb on + strand, within ABZR87_RS03715at 772.812 kb on + strand, within ABZR87_RS03715at 772.812 kb on + strand, within ABZR87_RS03715at 772.813 kb on - strand, within ABZR87_RS03715at 772.813 kb on - strand, within ABZR87_RS03715at 772.813 kb on - strand, within ABZR87_RS03715at 772.924 kb on + strand, within ABZR87_RS03715at 772.924 kb on + strand, within ABZR87_RS03715at 772.924 kb on + strand, within ABZR87_RS03715at 772.924 kb on + strand, within ABZR87_RS03715at 772.925 kb on - strand, within ABZR87_RS03715at 772.925 kb on - strand, within ABZR87_RS03715at 772.925 kb on - strand, within ABZR87_RS03715at 772.925 kb on - strand, within ABZR87_RS03715at 772.925 kb on - strand, within ABZR87_RS03715at 772.925 kb on - strand, within ABZR87_RS03715at 772.941 kb on - strand, within ABZR87_RS03715at 772.941 kb on - strand, within ABZR87_RS03715at 773.323 kb on + strandat 773.323 kb on + strandat 773.324 kb on - strandat 773.324 kb on - strandat 773.324 kb on - strandat 773.324 kb on - strandat 773.333 kb on - strandat 773.333 kb on - strandat 773.346 kb on + strandat 773.347 kb on - strandat 773.355 kb on + strandat 773.355 kb on + strandat 773.355 kb on + strandat 773.355 kb on + strandat 773.355 kb on + strandat 773.355 kb on + strandat 773.355 kb on + strandat 773.356 kb on - strandat 773.356 kb on - strandat 773.356 kb on - strandat 773.356 kb on - strandat 773.356 kb on - strandat 773.358 kb on + strandat 773.358 kb on + strandat 773.358 kb on + strandat 773.358 kb on + strandat 773.358 kb on + strandat 773.359 kb on - strand, within ABZR87_RS03720at 773.359 kb on - strand, within ABZR87_RS03720at 773.359 kb on - strand, within ABZR87_RS03720at 773.359 kb on - strand, within ABZR87_RS03720at 773.359 kb on - strand, within ABZR87_RS03720at 773.359 kb on - strand, within ABZR87_RS03720at 773.359 kb on - strand, within ABZR87_RS03720at 773.359 kb on - strand, within ABZR87_RS03720at 773.359 kb on - strand, within ABZR87_RS03720at 773.406 kb on + strand, within ABZR87_RS03720at 773.406 kb on + strand, within ABZR87_RS03720at 773.406 kb on + strand, within ABZR87_RS03720at 773.406 kb on + strand, within ABZR87_RS03720at 773.407 kb on - strand, within ABZR87_RS03720at 773.410 kb on + strand, within ABZR87_RS03720at 773.410 kb on + strand, within ABZR87_RS03720at 773.411 kb on - strand, within ABZR87_RS03720at 773.411 kb on - strand, within ABZR87_RS03720at 773.411 kb on - strand, within ABZR87_RS03720at 773.411 kb on - strand, within ABZR87_RS03720at 773.429 kb on + strand, within ABZR87_RS03720at 773.429 kb on + strand, within ABZR87_RS03720at 773.441 kb on + strand, within ABZR87_RS03720at 773.441 kb on + strand, within ABZR87_RS03720at 773.441 kb on + strand, within ABZR87_RS03720at 773.578 kb on + strand, within ABZR87_RS03720at 773.582 kb on + strand, within ABZR87_RS03720at 773.582 kb on + strand, within ABZR87_RS03720at 773.653 kb on + strand, within ABZR87_RS03720at 773.653 kb on + strand, within ABZR87_RS03720at 773.654 kb on - strandat 773.690 kb on + strandat 773.690 kb on + strandat 773.690 kb on + strandat 773.691 kb on - strandat 773.691 kb on - strandat 773.691 kb on - strandat 773.820 kb on + strandat 773.820 kb on + strandat 773.927 kb on + strandat 773.927 kb on + strandat 773.928 kb on - strandat 773.928 kb on - strandat 773.928 kb on - strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.929 kb on + strandat 773.930 kb on - strandat 773.930 kb on - strandat 773.930 kb on - strandat 773.930 kb on - strandat 773.930 kb on - strandat 773.930 kb on - strandat 773.985 kb on + strandat 773.985 kb on + strandat 773.986 kb on - strandat 773.986 kb on - strandat 773.986 kb on - strandat 773.986 kb on - strandat 773.986 kb on - strandat 774.188 kb on - strandat 774.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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771,839 - ABZR87_RS03710 0.38 -1.7
771,839 - ABZR87_RS03710 0.38 +1.1
771,865 + ABZR87_RS03710 0.40 +0.0
771,865 + ABZR87_RS03710 0.40 +0.7
771,866 - ABZR87_RS03710 0.40 +0.9
771,921 + ABZR87_RS03710 0.44 -1.2
771,922 - ABZR87_RS03710 0.44 +0.6
771,922 - ABZR87_RS03710 0.44 -0.1
772,064 + ABZR87_RS03710 0.56 -1.3
772,117 + ABZR87_RS03710 0.60 +0.1
772,118 - ABZR87_RS03710 0.60 -0.0
772,156 + ABZR87_RS03710 0.63 +0.5
772,156 + ABZR87_RS03710 0.63 +0.5
772,156 + ABZR87_RS03710 0.63 -1.8
772,157 - ABZR87_RS03710 0.63 -0.2
772,157 - ABZR87_RS03710 0.63 -0.1
772,157 - ABZR87_RS03710 0.63 -0.7
772,157 - ABZR87_RS03710 0.63 -0.7
772,157 - ABZR87_RS03710 0.63 +2.1
772,193 - ABZR87_RS03710 0.66 +0.3
772,193 - ABZR87_RS03710 0.66 -0.1
772,193 - ABZR87_RS03710 0.66 -2.0
772,193 - ABZR87_RS03710 0.66 +0.9
772,193 - ABZR87_RS03710 0.66 +0.7
772,193 - ABZR87_RS03710 0.66 +0.4
772,468 - ABZR87_RS03710 0.88 +0.2
772,695 + -0.7
772,764 + +0.7
772,765 - -0.7
772,765 - +0.1
772,793 - ABZR87_RS03715 0.15 -0.5
772,806 + ABZR87_RS03715 0.17 -0.9
772,807 - ABZR87_RS03715 0.17 +0.4
772,812 + ABZR87_RS03715 0.18 -1.3
772,812 + ABZR87_RS03715 0.18 +0.8
772,812 + ABZR87_RS03715 0.18 -0.0
772,812 + ABZR87_RS03715 0.18 -0.6
772,812 + ABZR87_RS03715 0.18 -0.2
772,812 + ABZR87_RS03715 0.18 -0.6
772,812 + ABZR87_RS03715 0.18 +0.1
772,813 - ABZR87_RS03715 0.18 -0.5
772,813 - ABZR87_RS03715 0.18 -1.7
772,813 - ABZR87_RS03715 0.18 +0.5
772,924 + ABZR87_RS03715 0.38 +2.5
772,924 + ABZR87_RS03715 0.38 +1.0
772,924 + ABZR87_RS03715 0.38 -0.6
772,924 + ABZR87_RS03715 0.38 -0.3
772,925 - ABZR87_RS03715 0.38 -1.0
772,925 - ABZR87_RS03715 0.38 -0.4
772,925 - ABZR87_RS03715 0.38 +0.5
772,925 - ABZR87_RS03715 0.38 +0.5
772,925 - ABZR87_RS03715 0.38 -0.1
772,925 - ABZR87_RS03715 0.38 -0.3
772,941 - ABZR87_RS03715 0.41 +0.5
772,941 - ABZR87_RS03715 0.41 +0.2
773,323 + +0.3
773,323 + -0.2
773,324 - -2.1
773,324 - +0.7
773,324 - -1.4
773,324 - -1.0
773,333 - +1.9
773,333 - +0.7
773,346 + +0.8
773,347 - -0.8
773,355 + -0.0
773,355 + +0.7
773,355 + +0.2
773,355 + +0.4
773,355 + -0.3
773,355 + +0.0
773,355 + -0.2
773,356 - +0.8
773,356 - -0.8
773,356 - +0.4
773,356 - -1.3
773,356 - +1.1
773,358 + -1.0
773,358 + +1.8
773,358 + +0.3
773,358 + -0.3
773,358 + -0.9
773,359 - ABZR87_RS03720 0.10 +0.0
773,359 - ABZR87_RS03720 0.10 -0.9
773,359 - ABZR87_RS03720 0.10 +0.5
773,359 - ABZR87_RS03720 0.10 -0.6
773,359 - ABZR87_RS03720 0.10 -0.3
773,359 - ABZR87_RS03720 0.10 +1.0
773,359 - ABZR87_RS03720 0.10 -0.2
773,359 - ABZR87_RS03720 0.10 +0.2
773,359 - ABZR87_RS03720 0.10 +0.1
773,406 + ABZR87_RS03720 0.23 +0.2
773,406 + ABZR87_RS03720 0.23 -0.5
773,406 + ABZR87_RS03720 0.23 -0.4
773,406 + ABZR87_RS03720 0.23 +1.4
773,407 - ABZR87_RS03720 0.23 +0.7
773,410 + ABZR87_RS03720 0.24 +1.7
773,410 + ABZR87_RS03720 0.24 -1.5
773,411 - ABZR87_RS03720 0.24 +1.1
773,411 - ABZR87_RS03720 0.24 -0.9
773,411 - ABZR87_RS03720 0.24 +1.1
773,411 - ABZR87_RS03720 0.24 +0.7
773,429 + ABZR87_RS03720 0.29 +0.7
773,429 + ABZR87_RS03720 0.29 +0.7
773,441 + ABZR87_RS03720 0.32 -0.0
773,441 + ABZR87_RS03720 0.32 -0.2
773,441 + ABZR87_RS03720 0.32 -0.0
773,578 + ABZR87_RS03720 0.69 -0.3
773,582 + ABZR87_RS03720 0.70 -2.4
773,582 + ABZR87_RS03720 0.70 +0.8
773,653 + ABZR87_RS03720 0.90 +2.5
773,653 + ABZR87_RS03720 0.90 +0.3
773,654 - +0.3
773,690 + -0.0
773,690 + -0.7
773,690 + +0.5
773,691 - -0.4
773,691 - -0.2
773,691 - +1.3
773,820 + -1.3
773,820 + -1.1
773,927 + +1.1
773,927 + -0.8
773,928 - +0.7
773,928 - +0.8
773,928 - -0.4
773,929 + +1.6
773,929 + -1.1
773,929 + +1.2
773,929 + +0.8
773,929 + -0.6
773,929 + +0.3
773,929 + +0.3
773,929 + +0.1
773,929 + -0.4
773,929 + -0.1
773,930 - -0.7
773,930 - -0.6
773,930 - +1.2
773,930 - +0.3
773,930 - -0.1
773,930 - +2.7
773,985 + -0.3
773,985 + -0.1
773,986 - +0.0
773,986 - +0.5
773,986 - -0.3
773,986 - +0.9
773,986 - -0.7
774,188 - +0.3
774,188 - +0.8

Or see this region's nucleotide sequence