Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03110 and ABZR87_RS03115 are separated by 117 nucleotides ABZR87_RS03115 and ABZR87_RS03120 are separated by 510 nucleotides
ABZR87_RS03110: ABZR87_RS03110 - alpha/beta fold hydrolase, at 654,511 to 655,431
_RS03110
ABZR87_RS03115: ABZR87_RS03115 - helix-turn-helix transcriptional regulator, at 655,549 to 656,511
_RS03115
ABZR87_RS03120: ABZR87_RS03120 - hypothetical protein, at 657,022 to 657,765
_RS03120
Position (kb) 655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 654.753 kb on + strand, within ABZR87_RS03110 at 654.754 kb on - strand, within ABZR87_RS03110 at 654.783 kb on - strand, within ABZR87_RS03110 at 654.783 kb on - strand, within ABZR87_RS03110 at 655.142 kb on + strand, within ABZR87_RS03110 at 655.208 kb on + strand, within ABZR87_RS03110 at 655.208 kb on + strand, within ABZR87_RS03110 at 655.265 kb on + strand, within ABZR87_RS03110 at 655.266 kb on - strand, within ABZR87_RS03110 at 655.266 kb on - strand, within ABZR87_RS03110 at 655.472 kb on - strand at 655.499 kb on + strand at 655.499 kb on + strand at 655.499 kb on + strand at 655.500 kb on - strand at 655.510 kb on + strand at 655.510 kb on + strand at 655.511 kb on - strand at 655.511 kb on - strand at 655.524 kb on - strand at 655.524 kb on - strand at 655.524 kb on - strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.541 kb on + strand at 655.542 kb on - strand at 655.542 kb on - strand at 655.542 kb on - strand at 655.542 kb on - strand at 655.720 kb on + strand, within ABZR87_RS03115 at 655.721 kb on - strand, within ABZR87_RS03115 at 655.721 kb on - strand, within ABZR87_RS03115 at 655.722 kb on + strand, within ABZR87_RS03115 at 655.722 kb on + strand, within ABZR87_RS03115 at 655.722 kb on + strand, within ABZR87_RS03115 at 655.722 kb on + strand, within ABZR87_RS03115 at 655.723 kb on - strand, within ABZR87_RS03115 at 655.723 kb on - strand, within ABZR87_RS03115 at 655.723 kb on - strand, within ABZR87_RS03115 at 655.723 kb on - strand, within ABZR87_RS03115 at 655.894 kb on + strand, within ABZR87_RS03115 at 655.895 kb on - strand, within ABZR87_RS03115 at 655.993 kb on + strand, within ABZR87_RS03115 at 656.127 kb on - strand, within ABZR87_RS03115 at 656.182 kb on + strand, within ABZR87_RS03115 at 656.182 kb on + strand, within ABZR87_RS03115 at 656.182 kb on + strand, within ABZR87_RS03115 at 656.182 kb on + strand, within ABZR87_RS03115 at 656.183 kb on - strand, within ABZR87_RS03115 at 656.183 kb on - strand, within ABZR87_RS03115 at 656.183 kb on - strand, within ABZR87_RS03115 at 656.313 kb on + strand, within ABZR87_RS03115 at 656.313 kb on + strand, within ABZR87_RS03115 at 656.314 kb on - strand, within ABZR87_RS03115 at 656.314 kb on - strand, within ABZR87_RS03115 at 656.461 kb on + strand at 656.461 kb on + strand at 656.499 kb on + strand at 656.500 kb on - strand at 656.500 kb on - strand at 656.500 kb on - strand at 656.500 kb on - strand at 656.500 kb on - strand at 656.502 kb on + strand at 656.502 kb on + strand at 656.502 kb on + strand at 656.502 kb on + strand at 656.502 kb on + strand at 656.502 kb on + strand at 656.502 kb on + strand at 656.502 kb on + strand at 656.503 kb on - strand at 656.503 kb on - strand at 656.503 kb on - strand at 656.503 kb on - strand at 656.503 kb on - strand at 656.503 kb on - strand at 656.503 kb on - strand at 656.503 kb on - strand at 656.503 kb on - strand at 656.509 kb on + strand at 656.509 kb on + strand at 656.509 kb on + strand at 656.509 kb on + strand at 656.510 kb on - strand at 656.510 kb on - strand at 656.510 kb on - strand at 656.533 kb on - strand at 656.533 kb on - strand at 656.552 kb on + strand at 656.552 kb on + strand at 656.552 kb on + strand at 656.552 kb on + strand at 656.553 kb on - strand at 656.553 kb on - strand at 656.598 kb on + strand at 656.598 kb on + strand at 656.598 kb on + strand at 656.598 kb on + strand at 656.599 kb on - strand at 656.662 kb on + strand at 656.662 kb on + strand at 656.663 kb on - strand at 656.663 kb on - strand at 656.705 kb on + strand at 656.705 kb on + strand at 656.705 kb on + strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.706 kb on - strand at 656.708 kb on + strand at 656.708 kb on + strand at 656.708 kb on + strand at 656.765 kb on + strand at 656.769 kb on + strand at 656.769 kb on + strand at 656.769 kb on + strand at 656.769 kb on + strand at 656.769 kb on + strand at 656.770 kb on - strand at 656.770 kb on - strand at 656.770 kb on - strand at 656.770 kb on - strand at 656.792 kb on + strand at 656.792 kb on + strand at 656.793 kb on - strand at 656.793 kb on - strand at 656.850 kb on + strand at 656.850 kb on + strand at 656.850 kb on + strand at 656.850 kb on + strand at 656.851 kb on - strand at 656.851 kb on - strand at 656.863 kb on - strand at 656.871 kb on + strand at 656.871 kb on + strand at 656.872 kb on - strand at 656.892 kb on + strand at 656.998 kb on + strand at 656.998 kb on + strand at 656.998 kb on + strand at 656.998 kb on + strand at 656.998 kb on + strand at 656.999 kb on - strand at 656.999 kb on - strand at 656.999 kb on - strand at 657.013 kb on + strand at 657.013 kb on + strand at 657.014 kb on - strand at 657.014 kb on - strand at 657.094 kb on + strand at 657.095 kb on - strand at 657.095 kb on - strand at 657.095 kb on - strand at 657.148 kb on + strand, within ABZR87_RS03120 at 657.148 kb on + strand, within ABZR87_RS03120 at 657.148 kb on + strand, within ABZR87_RS03120 at 657.148 kb on + strand, within ABZR87_RS03120 at 657.149 kb on - strand, within ABZR87_RS03120 at 657.149 kb on - strand, within ABZR87_RS03120 at 657.219 kb on + strand, within ABZR87_RS03120 at 657.219 kb on + strand, within ABZR87_RS03120 at 657.219 kb on + strand, within ABZR87_RS03120 at 657.219 kb on + strand, within ABZR87_RS03120 at 657.220 kb on - strand, within ABZR87_RS03120 at 657.220 kb on - strand, within ABZR87_RS03120 at 657.220 kb on - strand, within ABZR87_RS03120 at 657.220 kb on - strand, within ABZR87_RS03120 at 657.256 kb on + strand, within ABZR87_RS03120 at 657.256 kb on + strand, within ABZR87_RS03120 at 657.257 kb on - strand, within ABZR87_RS03120 at 657.257 kb on - strand, within ABZR87_RS03120 at 657.280 kb on - strand, within ABZR87_RS03120 at 657.282 kb on - strand, within ABZR87_RS03120 at 657.282 kb on - strand, within ABZR87_RS03120 at 657.282 kb on - strand, within ABZR87_RS03120 at 657.282 kb on - strand, within ABZR87_RS03120 at 657.282 kb on - strand, within ABZR87_RS03120 at 657.339 kb on - strand, within ABZR87_RS03120 at 657.399 kb on + strand, within ABZR87_RS03120 at 657.399 kb on + strand, within ABZR87_RS03120 at 657.402 kb on - strand, within ABZR87_RS03120 at 657.446 kb on - strand, within ABZR87_RS03120 at 657.446 kb on - strand, within ABZR87_RS03120 at 657.447 kb on + strand, within ABZR87_RS03120 at 657.448 kb on - strand, within ABZR87_RS03120 at 657.448 kb on - strand, within ABZR87_RS03120 at 657.505 kb on + strand, within ABZR87_RS03120 at 657.505 kb on + strand, within ABZR87_RS03120 at 657.505 kb on + strand, within ABZR87_RS03120 at 657.505 kb on + strand, within ABZR87_RS03120 at 657.505 kb on + strand, within ABZR87_RS03120 at 657.506 kb on - strand, within ABZR87_RS03120 at 657.506 kb on - strand, within ABZR87_RS03120 at 657.506 kb on - strand, within ABZR87_RS03120 at 657.506 kb on - strand, within ABZR87_RS03120 at 657.506 kb on - strand, within ABZR87_RS03120
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 654,753 + ABZR87_RS03110 0.26 +0.1 654,754 - ABZR87_RS03110 0.26 -1.8 654,783 - ABZR87_RS03110 0.30 -0.4 654,783 - ABZR87_RS03110 0.30 +1.3 655,142 + ABZR87_RS03110 0.69 -0.5 655,208 + ABZR87_RS03110 0.76 +0.5 655,208 + ABZR87_RS03110 0.76 -1.8 655,265 + ABZR87_RS03110 0.82 -0.0 655,266 - ABZR87_RS03110 0.82 +0.4 655,266 - ABZR87_RS03110 0.82 -1.0 655,472 - -0.2 655,499 + +2.5 655,499 + +0.4 655,499 + +2.7 655,500 - +0.2 655,510 + +0.7 655,510 + -1.1 655,511 - +0.2 655,511 - -0.4 655,524 - +0.2 655,524 - -1.7 655,524 - +1.1 655,541 + +0.3 655,541 + +0.1 655,541 + -1.9 655,541 + -0.4 655,541 + +0.2 655,541 + -2.1 655,542 - +1.0 655,542 - -0.2 655,542 - +0.1 655,542 - +0.2 655,720 + ABZR87_RS03115 0.18 -0.5 655,721 - ABZR87_RS03115 0.18 -1.1 655,721 - ABZR87_RS03115 0.18 +0.4 655,722 + ABZR87_RS03115 0.18 -0.4 655,722 + ABZR87_RS03115 0.18 -2.1 655,722 + ABZR87_RS03115 0.18 -0.6 655,722 + ABZR87_RS03115 0.18 -0.8 655,723 - ABZR87_RS03115 0.18 -0.5 655,723 - ABZR87_RS03115 0.18 -0.9 655,723 - ABZR87_RS03115 0.18 -0.9 655,723 - ABZR87_RS03115 0.18 +0.9 655,894 + ABZR87_RS03115 0.36 -0.2 655,895 - ABZR87_RS03115 0.36 +1.7 655,993 + ABZR87_RS03115 0.46 -0.5 656,127 - ABZR87_RS03115 0.60 -1.5 656,182 + ABZR87_RS03115 0.66 -0.8 656,182 + ABZR87_RS03115 0.66 -2.0 656,182 + ABZR87_RS03115 0.66 -1.4 656,182 + ABZR87_RS03115 0.66 -0.9 656,183 - ABZR87_RS03115 0.66 +0.5 656,183 - ABZR87_RS03115 0.66 +1.6 656,183 - ABZR87_RS03115 0.66 +0.5 656,313 + ABZR87_RS03115 0.79 +0.1 656,313 + ABZR87_RS03115 0.79 -0.9 656,314 - ABZR87_RS03115 0.79 +0.5 656,314 - ABZR87_RS03115 0.79 -0.6 656,461 + -0.9 656,461 + -0.5 656,499 + -0.6 656,500 - +0.8 656,500 - -0.8 656,500 - -0.8 656,500 - +0.4 656,500 - -0.1 656,502 + +1.2 656,502 + -0.6 656,502 + +0.7 656,502 + -0.4 656,502 + +0.4 656,502 + +0.0 656,502 + +0.7 656,502 + +0.6 656,503 - -0.2 656,503 - -0.4 656,503 - -0.3 656,503 - +1.9 656,503 - +1.4 656,503 - +0.9 656,503 - +3.7 656,503 - +0.5 656,503 - -0.6 656,509 + +0.5 656,509 + -0.2 656,509 + +0.5 656,509 + +0.5 656,510 - -1.2 656,510 - +0.3 656,510 - +0.2 656,533 - +0.2 656,533 - +2.1 656,552 + -0.7 656,552 + -0.2 656,552 + -0.4 656,552 + -0.1 656,553 - +1.6 656,553 - +0.9 656,598 + +0.1 656,598 + +0.1 656,598 + -0.3 656,598 + +0.3 656,599 - +0.4 656,662 + +0.2 656,662 + +0.7 656,663 - +0.3 656,663 - +0.2 656,705 + -1.6 656,705 + +1.8 656,705 + -0.0 656,706 - +0.0 656,706 - +0.2 656,706 - +0.9 656,706 - +0.4 656,706 - -0.5 656,706 - -1.0 656,706 - -1.0 656,706 - +0.0 656,706 - +1.1 656,706 - +0.4 656,706 - -0.5 656,706 - +0.9 656,708 + +1.8 656,708 + +0.5 656,708 + -0.3 656,765 + +0.2 656,769 + -0.0 656,769 + -0.2 656,769 + -0.3 656,769 + -1.8 656,769 + -0.2 656,770 - -1.4 656,770 - -0.5 656,770 - +0.4 656,770 - -3.0 656,792 + -0.5 656,792 + -0.1 656,793 - +3.3 656,793 - +2.6 656,850 + -1.2 656,850 + -0.6 656,850 + -1.1 656,850 + -0.0 656,851 - +0.6 656,851 - -0.3 656,863 - +1.9 656,871 + -1.4 656,871 + +1.0 656,872 - +0.2 656,892 + -0.5 656,998 + +0.9 656,998 + -1.5 656,998 + -0.1 656,998 + -0.4 656,998 + -0.5 656,999 - -1.4 656,999 - -0.0 656,999 - -0.9 657,013 + +1.0 657,013 + +4.9 657,014 - +3.8 657,014 - -1.3 657,094 + -0.3 657,095 - +0.4 657,095 - -0.6 657,095 - +1.7 657,148 + ABZR87_RS03120 0.17 +0.3 657,148 + ABZR87_RS03120 0.17 +0.7 657,148 + ABZR87_RS03120 0.17 +0.5 657,148 + ABZR87_RS03120 0.17 +1.6 657,149 - ABZR87_RS03120 0.17 -3.0 657,149 - ABZR87_RS03120 0.17 -0.1 657,219 + ABZR87_RS03120 0.26 -0.1 657,219 + ABZR87_RS03120 0.26 +1.1 657,219 + ABZR87_RS03120 0.26 -0.4 657,219 + ABZR87_RS03120 0.26 -1.5 657,220 - ABZR87_RS03120 0.27 +1.4 657,220 - ABZR87_RS03120 0.27 -0.9 657,220 - ABZR87_RS03120 0.27 +0.6 657,220 - ABZR87_RS03120 0.27 +1.9 657,256 + ABZR87_RS03120 0.31 -0.9 657,256 + ABZR87_RS03120 0.31 -0.6 657,257 - ABZR87_RS03120 0.32 +2.1 657,257 - ABZR87_RS03120 0.32 +0.9 657,280 - ABZR87_RS03120 0.35 +0.3 657,282 - ABZR87_RS03120 0.35 -0.6 657,282 - ABZR87_RS03120 0.35 +0.1 657,282 - ABZR87_RS03120 0.35 +0.4 657,282 - ABZR87_RS03120 0.35 +1.6 657,282 - ABZR87_RS03120 0.35 -0.6 657,339 - ABZR87_RS03120 0.43 -1.1 657,399 + ABZR87_RS03120 0.51 +1.4 657,399 + ABZR87_RS03120 0.51 +0.6 657,402 - ABZR87_RS03120 0.51 -0.6 657,446 - ABZR87_RS03120 0.57 +1.3 657,446 - ABZR87_RS03120 0.57 -1.4 657,447 + ABZR87_RS03120 0.57 -0.6 657,448 - ABZR87_RS03120 0.57 +0.8 657,448 - ABZR87_RS03120 0.57 +0.6 657,505 + ABZR87_RS03120 0.65 +0.1 657,505 + ABZR87_RS03120 0.65 -0.4 657,505 + ABZR87_RS03120 0.65 -0.1 657,505 + ABZR87_RS03120 0.65 +0.0 657,505 + ABZR87_RS03120 0.65 -0.2 657,506 - ABZR87_RS03120 0.65 -1.1 657,506 - ABZR87_RS03120 0.65 -1.9 657,506 - ABZR87_RS03120 0.65 -0.9 657,506 - ABZR87_RS03120 0.65 -0.5 657,506 - ABZR87_RS03120 0.65 +1.2
Or see this region's nucleotide sequence