Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02060

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02055 and ABZR87_RS02060 are separated by 47 nucleotidesABZR87_RS02060 and ABZR87_RS02065 are separated by 262 nucleotides ABZR87_RS02055: ABZR87_RS02055 - ABC transporter substrate-binding protein, at 441,843 to 443,000 _RS02055 ABZR87_RS02060: ABZR87_RS02060 - acetylornithine deacetylase, at 443,048 to 444,250 _RS02060 ABZR87_RS02065: ABZR87_RS02065 - M20 aminoacylase family protein, at 444,513 to 445,700 _RS02065 Position (kb) 443 444 445Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 442.099 kb on - strand, within ABZR87_RS02055at 442.124 kb on + strand, within ABZR87_RS02055at 442.125 kb on - strand, within ABZR87_RS02055at 442.125 kb on - strand, within ABZR87_RS02055at 442.170 kb on + strand, within ABZR87_RS02055at 442.170 kb on + strand, within ABZR87_RS02055at 442.171 kb on - strand, within ABZR87_RS02055at 442.305 kb on + strand, within ABZR87_RS02055at 442.305 kb on + strand, within ABZR87_RS02055at 442.374 kb on + strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.375 kb on - strand, within ABZR87_RS02055at 442.390 kb on - strand, within ABZR87_RS02055at 442.557 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.617 kb on + strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.618 kb on - strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.624 kb on + strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.625 kb on - strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.655 kb on + strand, within ABZR87_RS02055at 442.656 kb on - strand, within ABZR87_RS02055at 442.656 kb on - strand, within ABZR87_RS02055at 442.705 kb on - strand, within ABZR87_RS02055at 442.710 kb on + strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.711 kb on - strand, within ABZR87_RS02055at 442.713 kb on - strand, within ABZR87_RS02055at 442.740 kb on + strand, within ABZR87_RS02055at 442.741 kb on - strand, within ABZR87_RS02055at 442.741 kb on - strand, within ABZR87_RS02055at 442.770 kb on - strand, within ABZR87_RS02055at 442.782 kb on + strand, within ABZR87_RS02055at 442.782 kb on + strand, within ABZR87_RS02055at 442.800 kb on + strand, within ABZR87_RS02055at 442.800 kb on + strand, within ABZR87_RS02055at 442.801 kb on - strand, within ABZR87_RS02055at 442.801 kb on - strand, within ABZR87_RS02055at 442.896 kb on + strandat 442.896 kb on + strandat 442.896 kb on + strandat 442.896 kb on + strandat 442.897 kb on - strandat 442.897 kb on - strandat 443.130 kb on + strandat 443.131 kb on - strandat 443.131 kb on - strandat 443.131 kb on - strandat 443.223 kb on + strand, within ABZR87_RS02060at 443.223 kb on + strand, within ABZR87_RS02060at 443.224 kb on - strand, within ABZR87_RS02060at 443.314 kb on + strand, within ABZR87_RS02060at 443.314 kb on + strand, within ABZR87_RS02060at 443.314 kb on + strand, within ABZR87_RS02060at 443.315 kb on - strand, within ABZR87_RS02060at 443.391 kb on + strand, within ABZR87_RS02060at 443.391 kb on + strand, within ABZR87_RS02060at 443.392 kb on - strand, within ABZR87_RS02060at 443.392 kb on - strand, within ABZR87_RS02060at 443.392 kb on - strand, within ABZR87_RS02060at 443.392 kb on - strand, within ABZR87_RS02060at 443.492 kb on - strand, within ABZR87_RS02060at 443.590 kb on + strand, within ABZR87_RS02060at 443.590 kb on + strand, within ABZR87_RS02060at 443.590 kb on + strand, within ABZR87_RS02060at 443.591 kb on - strand, within ABZR87_RS02060at 443.591 kb on - strand, within ABZR87_RS02060at 443.591 kb on - strand, within ABZR87_RS02060at 443.591 kb on - strand, within ABZR87_RS02060at 443.683 kb on - strand, within ABZR87_RS02060at 443.683 kb on - strand, within ABZR87_RS02060at 443.820 kb on + strand, within ABZR87_RS02060at 443.820 kb on + strand, within ABZR87_RS02060at 443.821 kb on - strand, within ABZR87_RS02060at 443.821 kb on - strand, within ABZR87_RS02060at 443.821 kb on - strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.831 kb on + strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.832 kb on - strand, within ABZR87_RS02060at 443.875 kb on + strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 443.876 kb on - strand, within ABZR87_RS02060at 444.084 kb on + strand, within ABZR87_RS02060at 444.084 kb on + strand, within ABZR87_RS02060at 444.084 kb on + strand, within ABZR87_RS02060at 444.084 kb on + strand, within ABZR87_RS02060at 444.084 kb on + strand, within ABZR87_RS02060at 444.084 kb on + strand, within ABZR87_RS02060at 444.085 kb on - strand, within ABZR87_RS02060at 444.085 kb on - strand, within ABZR87_RS02060at 444.336 kb on + strandat 444.336 kb on + strandat 444.336 kb on + strandat 444.336 kb on + strandat 444.337 kb on - strandat 444.337 kb on - strandat 444.337 kb on - strandat 444.365 kb on + strandat 444.365 kb on + strandat 444.365 kb on + strandat 444.366 kb on - strandat 444.402 kb on + strandat 444.465 kb on + strandat 444.465 kb on + strandat 444.855 kb on + strand, within ABZR87_RS02065at 444.855 kb on + strand, within ABZR87_RS02065at 444.855 kb on + strand, within ABZR87_RS02065at 444.855 kb on + strand, within ABZR87_RS02065at 444.855 kb on + strand, within ABZR87_RS02065at 444.855 kb on + strand, within ABZR87_RS02065at 444.855 kb on + strand, within ABZR87_RS02065at 444.855 kb on + strand, within ABZR87_RS02065at 444.856 kb on - strand, within ABZR87_RS02065at 444.856 kb on - strand, within ABZR87_RS02065at 444.856 kb on - strand, within ABZR87_RS02065at 444.856 kb on - strand, within ABZR87_RS02065at 445.148 kb on - strand, within ABZR87_RS02065at 445.148 kb on - strand, within ABZR87_RS02065at 445.148 kb on - strand, within ABZR87_RS02065at 445.148 kb on - strand, within ABZR87_RS02065at 445.172 kb on + strand, within ABZR87_RS02065at 445.172 kb on + strand, within ABZR87_RS02065at 445.172 kb on + strand, within ABZR87_RS02065at 445.173 kb on - strand, within ABZR87_RS02065at 445.173 kb on - strand, within ABZR87_RS02065

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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442,099 - ABZR87_RS02055 0.22 +0.7
442,124 + ABZR87_RS02055 0.24 +1.7
442,125 - ABZR87_RS02055 0.24 -0.1
442,125 - ABZR87_RS02055 0.24 -1.5
442,170 + ABZR87_RS02055 0.28 +0.8
442,170 + ABZR87_RS02055 0.28 -0.2
442,171 - ABZR87_RS02055 0.28 +1.7
442,305 + ABZR87_RS02055 0.40 +0.6
442,305 + ABZR87_RS02055 0.40 -0.2
442,374 + ABZR87_RS02055 0.46 +0.7
442,375 - ABZR87_RS02055 0.46 -0.6
442,375 - ABZR87_RS02055 0.46 +0.2
442,375 - ABZR87_RS02055 0.46 +1.2
442,375 - ABZR87_RS02055 0.46 -0.3
442,390 - ABZR87_RS02055 0.47 +0.3
442,557 + ABZR87_RS02055 0.62 -1.2
442,617 + ABZR87_RS02055 0.67 -1.7
442,617 + ABZR87_RS02055 0.67 +0.7
442,617 + ABZR87_RS02055 0.67 +0.3
442,618 - ABZR87_RS02055 0.67 -0.1
442,618 - ABZR87_RS02055 0.67 +1.4
442,618 - ABZR87_RS02055 0.67 +2.0
442,618 - ABZR87_RS02055 0.67 +0.5
442,618 - ABZR87_RS02055 0.67 +1.5
442,624 + ABZR87_RS02055 0.67 -1.9
442,624 + ABZR87_RS02055 0.67 +0.6
442,624 + ABZR87_RS02055 0.67 +0.0
442,625 - ABZR87_RS02055 0.68 +1.2
442,625 - ABZR87_RS02055 0.68 +0.1
442,625 - ABZR87_RS02055 0.68 +0.6
442,625 - ABZR87_RS02055 0.68 +1.3
442,625 - ABZR87_RS02055 0.68 +0.3
442,625 - ABZR87_RS02055 0.68 +2.7
442,655 + ABZR87_RS02055 0.70 +0.4
442,655 + ABZR87_RS02055 0.70 +0.2
442,655 + ABZR87_RS02055 0.70 -0.5
442,656 - ABZR87_RS02055 0.70 -0.6
442,656 - ABZR87_RS02055 0.70 +0.7
442,705 - ABZR87_RS02055 0.74 -0.1
442,710 + ABZR87_RS02055 0.75 -0.3
442,711 - ABZR87_RS02055 0.75 +0.8
442,711 - ABZR87_RS02055 0.75 +0.4
442,711 - ABZR87_RS02055 0.75 -0.4
442,711 - ABZR87_RS02055 0.75 -1.5
442,711 - ABZR87_RS02055 0.75 +0.3
442,713 - ABZR87_RS02055 0.75 +0.1
442,740 + ABZR87_RS02055 0.77 -0.8
442,741 - ABZR87_RS02055 0.78 +2.6
442,741 - ABZR87_RS02055 0.78 -0.4
442,770 - ABZR87_RS02055 0.80 -0.7
442,782 + ABZR87_RS02055 0.81 +0.6
442,782 + ABZR87_RS02055 0.81 +0.4
442,800 + ABZR87_RS02055 0.83 +1.2
442,800 + ABZR87_RS02055 0.83 +1.6
442,801 - ABZR87_RS02055 0.83 +2.8
442,801 - ABZR87_RS02055 0.83 -0.1
442,896 + -0.9
442,896 + +0.2
442,896 + -1.8
442,896 + +0.3
442,897 - -0.4
442,897 - +0.9
443,130 + +0.1
443,131 - +0.9
443,131 - -0.9
443,131 - +0.5
443,223 + ABZR87_RS02060 0.15 -0.5
443,223 + ABZR87_RS02060 0.15 -3.0
443,224 - ABZR87_RS02060 0.15 +1.0
443,314 + ABZR87_RS02060 0.22 +0.3
443,314 + ABZR87_RS02060 0.22 +0.5
443,314 + ABZR87_RS02060 0.22 -0.7
443,315 - ABZR87_RS02060 0.22 +0.4
443,391 + ABZR87_RS02060 0.29 -0.0
443,391 + ABZR87_RS02060 0.29 +0.1
443,392 - ABZR87_RS02060 0.29 -0.5
443,392 - ABZR87_RS02060 0.29 -0.2
443,392 - ABZR87_RS02060 0.29 -0.4
443,392 - ABZR87_RS02060 0.29 +0.8
443,492 - ABZR87_RS02060 0.37 +0.6
443,590 + ABZR87_RS02060 0.45 +1.1
443,590 + ABZR87_RS02060 0.45 -0.2
443,590 + ABZR87_RS02060 0.45 +0.1
443,591 - ABZR87_RS02060 0.45 +0.1
443,591 - ABZR87_RS02060 0.45 -1.1
443,591 - ABZR87_RS02060 0.45 -0.7
443,591 - ABZR87_RS02060 0.45 +0.4
443,683 - ABZR87_RS02060 0.53 +0.1
443,683 - ABZR87_RS02060 0.53 -1.8
443,820 + ABZR87_RS02060 0.64 -1.5
443,820 + ABZR87_RS02060 0.64 -0.8
443,821 - ABZR87_RS02060 0.64 -0.0
443,821 - ABZR87_RS02060 0.64 +0.5
443,821 - ABZR87_RS02060 0.64 +1.0
443,831 + ABZR87_RS02060 0.65 +0.4
443,831 + ABZR87_RS02060 0.65 +1.7
443,831 + ABZR87_RS02060 0.65 -1.2
443,831 + ABZR87_RS02060 0.65 +0.4
443,831 + ABZR87_RS02060 0.65 +1.0
443,831 + ABZR87_RS02060 0.65 +1.2
443,831 + ABZR87_RS02060 0.65 -0.3
443,831 + ABZR87_RS02060 0.65 -0.1
443,831 + ABZR87_RS02060 0.65 -0.3
443,832 - ABZR87_RS02060 0.65 -0.4
443,832 - ABZR87_RS02060 0.65 +0.4
443,832 - ABZR87_RS02060 0.65 -0.0
443,832 - ABZR87_RS02060 0.65 +1.3
443,832 - ABZR87_RS02060 0.65 +1.0
443,875 + ABZR87_RS02060 0.69 -1.3
443,876 - ABZR87_RS02060 0.69 -0.4
443,876 - ABZR87_RS02060 0.69 +0.0
443,876 - ABZR87_RS02060 0.69 -1.8
443,876 - ABZR87_RS02060 0.69 -0.3
443,876 - ABZR87_RS02060 0.69 +0.4
444,084 + ABZR87_RS02060 0.86 -0.6
444,084 + ABZR87_RS02060 0.86 +1.1
444,084 + ABZR87_RS02060 0.86 +0.2
444,084 + ABZR87_RS02060 0.86 -0.6
444,084 + ABZR87_RS02060 0.86 +1.6
444,084 + ABZR87_RS02060 0.86 +0.4
444,085 - ABZR87_RS02060 0.86 +0.2
444,085 - ABZR87_RS02060 0.86 -0.3
444,336 + +1.6
444,336 + +0.1
444,336 + +0.1
444,336 + +0.2
444,337 - -2.2
444,337 - -0.8
444,337 - +1.1
444,365 + -1.0
444,365 + -1.9
444,365 + +1.1
444,366 - +0.2
444,402 + -0.2
444,465 + +0.6
444,465 + -0.2
444,855 + ABZR87_RS02065 0.29 +2.3
444,855 + ABZR87_RS02065 0.29 +0.8
444,855 + ABZR87_RS02065 0.29 -1.2
444,855 + ABZR87_RS02065 0.29 -0.4
444,855 + ABZR87_RS02065 0.29 +0.9
444,855 + ABZR87_RS02065 0.29 +0.8
444,855 + ABZR87_RS02065 0.29 +0.9
444,855 + ABZR87_RS02065 0.29 +5.1
444,856 - ABZR87_RS02065 0.29 +0.9
444,856 - ABZR87_RS02065 0.29 +1.0
444,856 - ABZR87_RS02065 0.29 -0.2
444,856 - ABZR87_RS02065 0.29 +1.2
445,148 - ABZR87_RS02065 0.53 +0.9
445,148 - ABZR87_RS02065 0.53 +0.1
445,148 - ABZR87_RS02065 0.53 +0.5
445,148 - ABZR87_RS02065 0.53 +0.8
445,172 + ABZR87_RS02065 0.55 +5.2
445,172 + ABZR87_RS02065 0.55 +1.0
445,172 + ABZR87_RS02065 0.55 +1.6
445,173 - ABZR87_RS02065 0.56 -0.1
445,173 - ABZR87_RS02065 0.56 -0.7

Or see this region's nucleotide sequence