Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01075

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01065 and ABZR87_RS01070 are separated by 102 nucleotidesABZR87_RS01070 and ABZR87_RS01075 are separated by 261 nucleotidesABZR87_RS01075 and ABZR87_RS01080 are separated by 224 nucleotides ABZR87_RS01065: ABZR87_RS01065 - DNA repair protein RecN, at 212,956 to 214,662 _RS01065 ABZR87_RS01070: ABZR87_RS01070 - hypothetical protein, at 214,765 to 215,211 _RS01070 ABZR87_RS01075: ABZR87_RS01075 - MprA protease, GlyGly-CTERM protein-sorting domain-containing form, at 215,473 to 217,122 _RS01075 ABZR87_RS01080: ABZR87_RS01080 - S8 family serine peptidase, at 217,347 to 219,401 _RS01080 Position (kb) 215 216 217 218Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 214.669 kb on - strandat 214.669 kb on - strandat 214.669 kb on - strandat 214.734 kb on + strandat 214.734 kb on + strandat 214.915 kb on - strand, within ABZR87_RS01070at 215.066 kb on + strand, within ABZR87_RS01070at 215.066 kb on + strand, within ABZR87_RS01070at 215.067 kb on - strand, within ABZR87_RS01070at 215.067 kb on - strand, within ABZR87_RS01070at 215.295 kb on + strandat 215.295 kb on + strandat 215.295 kb on + strandat 215.296 kb on - strandat 215.296 kb on - strandat 215.296 kb on - strandat 215.387 kb on + strandat 215.387 kb on + strandat 215.388 kb on - strandat 215.403 kb on + strandat 215.403 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.596 kb on + strandat 215.597 kb on - strandat 215.597 kb on - strandat 215.827 kb on + strand, within ABZR87_RS01075at 215.827 kb on + strand, within ABZR87_RS01075at 215.827 kb on + strand, within ABZR87_RS01075at 215.828 kb on - strand, within ABZR87_RS01075at 215.828 kb on - strand, within ABZR87_RS01075at 215.828 kb on - strand, within ABZR87_RS01075at 215.828 kb on - strand, within ABZR87_RS01075at 215.828 kb on - strand, within ABZR87_RS01075at 215.828 kb on - strand, within ABZR87_RS01075at 215.828 kb on - strand, within ABZR87_RS01075at 216.002 kb on - strand, within ABZR87_RS01075at 216.043 kb on + strand, within ABZR87_RS01075at 216.044 kb on - strand, within ABZR87_RS01075at 216.044 kb on - strand, within ABZR87_RS01075at 216.044 kb on - strand, within ABZR87_RS01075at 216.584 kb on - strand, within ABZR87_RS01075at 216.747 kb on + strand, within ABZR87_RS01075at 216.748 kb on - strand, within ABZR87_RS01075at 216.937 kb on + strand, within ABZR87_RS01075at 216.937 kb on + strand, within ABZR87_RS01075at 216.937 kb on + strand, within ABZR87_RS01075at 216.937 kb on + strand, within ABZR87_RS01075at 216.938 kb on - strand, within ABZR87_RS01075at 216.938 kb on - strand, within ABZR87_RS01075at 216.938 kb on - strand, within ABZR87_RS01075at 217.014 kb on + strandat 217.088 kb on + strandat 217.131 kb on + strandat 217.131 kb on + strandat 217.131 kb on + strandat 217.132 kb on - strandat 217.132 kb on - strandat 217.132 kb on - strandat 217.132 kb on - strandat 217.221 kb on + strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.243 kb on + strandat 217.244 kb on - strandat 217.244 kb on - strandat 217.252 kb on + strandat 217.252 kb on + strandat 217.253 kb on - strandat 217.256 kb on + strandat 217.407 kb on + strandat 217.407 kb on + strandat 217.407 kb on + strandat 217.408 kb on - strandat 217.408 kb on - strandat 217.408 kb on - strandat 217.487 kb on + strandat 217.487 kb on + strandat 217.602 kb on + strand, within ABZR87_RS01080at 217.602 kb on + strand, within ABZR87_RS01080at 217.602 kb on + strand, within ABZR87_RS01080at 217.602 kb on + strand, within ABZR87_RS01080at 217.602 kb on + strand, within ABZR87_RS01080at 217.603 kb on - strand, within ABZR87_RS01080at 217.603 kb on - strand, within ABZR87_RS01080at 217.646 kb on + strand, within ABZR87_RS01080at 217.713 kb on + strand, within ABZR87_RS01080at 217.713 kb on + strand, within ABZR87_RS01080at 217.714 kb on - strand, within ABZR87_RS01080at 217.714 kb on - strand, within ABZR87_RS01080at 217.714 kb on - strand, within ABZR87_RS01080at 217.714 kb on - strand, within ABZR87_RS01080at 217.844 kb on + strand, within ABZR87_RS01080at 217.845 kb on - strand, within ABZR87_RS01080at 217.845 kb on - strand, within ABZR87_RS01080at 217.862 kb on + strand, within ABZR87_RS01080at 217.862 kb on + strand, within ABZR87_RS01080at 217.862 kb on + strand, within ABZR87_RS01080at 217.947 kb on - strand, within ABZR87_RS01080at 217.984 kb on - strand, within ABZR87_RS01080at 218.075 kb on + strand, within ABZR87_RS01080at 218.075 kb on + strand, within ABZR87_RS01080at 218.076 kb on - strand, within ABZR87_RS01080at 218.076 kb on - strand, within ABZR87_RS01080at 218.076 kb on - strand, within ABZR87_RS01080

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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214,669 - -0.6
214,669 - -0.4
214,669 - -1.5
214,734 + +0.5
214,734 + +0.3
214,915 - ABZR87_RS01070 0.34 -0.5
215,066 + ABZR87_RS01070 0.67 -0.5
215,066 + ABZR87_RS01070 0.67 -1.1
215,067 - ABZR87_RS01070 0.68 -0.4
215,067 - ABZR87_RS01070 0.68 +0.0
215,295 + -1.8
215,295 + +0.9
215,295 + +0.3
215,296 - -0.5
215,296 - -0.4
215,296 - +0.2
215,387 + -0.9
215,387 + -1.6
215,388 - +0.3
215,403 + -0.7
215,403 + -0.4
215,596 + +0.4
215,596 + +0.2
215,596 + -0.0
215,596 + -0.3
215,596 + +0.3
215,596 + -0.5
215,597 - +0.1
215,597 - -0.1
215,827 + ABZR87_RS01075 0.21 +0.1
215,827 + ABZR87_RS01075 0.21 -0.2
215,827 + ABZR87_RS01075 0.21 +0.6
215,828 - ABZR87_RS01075 0.22 -1.0
215,828 - ABZR87_RS01075 0.22 -1.0
215,828 - ABZR87_RS01075 0.22 -0.3
215,828 - ABZR87_RS01075 0.22 -0.3
215,828 - ABZR87_RS01075 0.22 +3.8
215,828 - ABZR87_RS01075 0.22 -0.7
215,828 - ABZR87_RS01075 0.22 -2.2
216,002 - ABZR87_RS01075 0.32 -0.1
216,043 + ABZR87_RS01075 0.35 +0.6
216,044 - ABZR87_RS01075 0.35 +0.4
216,044 - ABZR87_RS01075 0.35 -1.2
216,044 - ABZR87_RS01075 0.35 +0.2
216,584 - ABZR87_RS01075 0.67 -0.7
216,747 + ABZR87_RS01075 0.77 +0.6
216,748 - ABZR87_RS01075 0.77 +0.5
216,937 + ABZR87_RS01075 0.89 -1.6
216,937 + ABZR87_RS01075 0.89 -0.3
216,937 + ABZR87_RS01075 0.89 +0.6
216,937 + ABZR87_RS01075 0.89 -0.5
216,938 - ABZR87_RS01075 0.89 +1.2
216,938 - ABZR87_RS01075 0.89 -0.4
216,938 - ABZR87_RS01075 0.89 -0.9
217,014 + -0.4
217,088 + -0.3
217,131 + -1.0
217,131 + -0.5
217,131 + -0.4
217,132 - -0.6
217,132 - -0.5
217,132 - +0.5
217,132 - +0.9
217,221 + -1.4
217,222 - +1.6
217,222 - -0.8
217,243 + -0.5
217,244 - +1.7
217,244 - -1.0
217,252 + -0.5
217,252 + +3.7
217,253 - -1.6
217,256 + +0.1
217,407 + -1.4
217,407 + -2.5
217,407 + +1.6
217,408 - -0.0
217,408 - +0.2
217,408 - -1.1
217,487 + -0.9
217,487 + -0.3
217,602 + ABZR87_RS01080 0.12 +0.4
217,602 + ABZR87_RS01080 0.12 -0.9
217,602 + ABZR87_RS01080 0.12 +0.1
217,602 + ABZR87_RS01080 0.12 +0.5
217,602 + ABZR87_RS01080 0.12 -0.5
217,603 - ABZR87_RS01080 0.12 -1.1
217,603 - ABZR87_RS01080 0.12 -0.4
217,646 + ABZR87_RS01080 0.15 +0.7
217,713 + ABZR87_RS01080 0.18 -1.1
217,713 + ABZR87_RS01080 0.18 -1.0
217,714 - ABZR87_RS01080 0.18 -0.5
217,714 - ABZR87_RS01080 0.18 -1.2
217,714 - ABZR87_RS01080 0.18 -1.4
217,714 - ABZR87_RS01080 0.18 -1.5
217,844 + ABZR87_RS01080 0.24 -1.3
217,845 - ABZR87_RS01080 0.24 -0.3
217,845 - ABZR87_RS01080 0.24 +0.9
217,862 + ABZR87_RS01080 0.25 +0.0
217,862 + ABZR87_RS01080 0.25 +1.1
217,862 + ABZR87_RS01080 0.25 -0.4
217,947 - ABZR87_RS01080 0.29 -0.6
217,984 - ABZR87_RS01080 0.31 -2.3
218,075 + ABZR87_RS01080 0.35 -0.1
218,075 + ABZR87_RS01080 0.35 +0.1
218,076 - ABZR87_RS01080 0.35 +0.1
218,076 - ABZR87_RS01080 0.35 +0.3
218,076 - ABZR87_RS01080 0.35 -0.2

Or see this region's nucleotide sequence