Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00665

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00655 and ABZR87_RS00660 overlap by 4 nucleotidesABZR87_RS00660 and ABZR87_RS00665 overlap by 4 nucleotidesABZR87_RS00665 and ABZR87_RS00670 overlap by 4 nucleotidesABZR87_RS00670 and ABZR87_RS00675 are separated by 18 nucleotides ABZR87_RS00655: ABZR87_RS00655 - HutD family protein, at 134,883 to 135,461 _RS00655 ABZR87_RS00660: ABZR87_RS00660 - formimidoylglutamase, at 135,458 to 136,417 _RS00660 ABZR87_RS00665: ABZR87_RS00665 - amino acid ABC transporter ATP-binding protein, at 136,414 to 137,214 _RS00665 ABZR87_RS00670: ABZR87_RS00670 - amino acid ABC transporter permease, at 137,211 to 137,879 _RS00670 ABZR87_RS00675: ABZR87_RS00675 - glutamine ABC transporter substrate-binding protein, at 137,898 to 138,662 _RS00675 Position (kb) 136 137 138Strain fitness (log2 ratio) -1 0 1 2at 135.526 kb on - strandat 135.526 kb on - strandat 135.622 kb on - strand, within ABZR87_RS00660at 135.622 kb on - strand, within ABZR87_RS00660at 135.622 kb on - strand, within ABZR87_RS00660at 135.687 kb on + strand, within ABZR87_RS00660at 135.688 kb on - strand, within ABZR87_RS00660at 135.688 kb on - strand, within ABZR87_RS00660at 135.774 kb on + strand, within ABZR87_RS00660at 135.775 kb on - strand, within ABZR87_RS00660at 135.849 kb on + strand, within ABZR87_RS00660at 135.849 kb on + strand, within ABZR87_RS00660at 135.849 kb on + strand, within ABZR87_RS00660at 135.849 kb on + strand, within ABZR87_RS00660at 135.849 kb on + strand, within ABZR87_RS00660at 135.849 kb on + strand, within ABZR87_RS00660at 135.850 kb on - strand, within ABZR87_RS00660at 135.850 kb on - strand, within ABZR87_RS00660at 135.850 kb on - strand, within ABZR87_RS00660at 135.863 kb on - strand, within ABZR87_RS00660at 136.090 kb on + strand, within ABZR87_RS00660at 136.091 kb on - strand, within ABZR87_RS00660at 136.091 kb on - strand, within ABZR87_RS00660at 136.091 kb on - strand, within ABZR87_RS00660at 136.091 kb on - strand, within ABZR87_RS00660at 136.621 kb on + strand, within ABZR87_RS00665at 136.622 kb on - strand, within ABZR87_RS00665at 136.622 kb on - strand, within ABZR87_RS00665at 137.129 kb on + strand, within ABZR87_RS00665at 137.129 kb on + strand, within ABZR87_RS00665at 137.263 kb on + strandat 137.263 kb on + strandat 137.263 kb on + strandat 137.263 kb on + strandat 137.263 kb on + strandat 137.264 kb on - strandat 137.264 kb on - strandat 137.264 kb on - strandat 137.290 kb on + strand, within ABZR87_RS00670at 137.290 kb on + strand, within ABZR87_RS00670at 137.291 kb on - strand, within ABZR87_RS00670at 137.291 kb on - strand, within ABZR87_RS00670at 137.291 kb on - strand, within ABZR87_RS00670at 137.291 kb on - strand, within ABZR87_RS00670at 137.312 kb on - strand, within ABZR87_RS00670at 137.330 kb on - strand, within ABZR87_RS00670at 137.572 kb on + strand, within ABZR87_RS00670at 137.572 kb on + strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.573 kb on - strand, within ABZR87_RS00670at 137.585 kb on - strand, within ABZR87_RS00670at 137.704 kb on + strand, within ABZR87_RS00670at 137.704 kb on + strand, within ABZR87_RS00670at 137.704 kb on + strand, within ABZR87_RS00670at 137.705 kb on - strand, within ABZR87_RS00670at 137.705 kb on - strand, within ABZR87_RS00670at 137.705 kb on - strand, within ABZR87_RS00670at 137.723 kb on - strand, within ABZR87_RS00670at 137.723 kb on - strand, within ABZR87_RS00670at 137.899 kb on + strandat 137.899 kb on + strandat 137.899 kb on + strandat 137.900 kb on - strandat 137.941 kb on + strandat 137.941 kb on + strandat 138.025 kb on + strand, within ABZR87_RS00675at 138.025 kb on + strand, within ABZR87_RS00675at 138.026 kb on - strand, within ABZR87_RS00675at 138.082 kb on + strand, within ABZR87_RS00675at 138.083 kb on - strand, within ABZR87_RS00675at 138.085 kb on + strand, within ABZR87_RS00675at 138.085 kb on + strand, within ABZR87_RS00675at 138.107 kb on + strand, within ABZR87_RS00675at 138.190 kb on + strand, within ABZR87_RS00675at 138.191 kb on - strand, within ABZR87_RS00675at 138.205 kb on + strand, within ABZR87_RS00675at 138.205 kb on + strand, within ABZR87_RS00675at 138.205 kb on + strand, within ABZR87_RS00675at 138.206 kb on - strand, within ABZR87_RS00675at 138.206 kb on - strand, within ABZR87_RS00675

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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135,526 - +0.7
135,526 - +1.8
135,622 - ABZR87_RS00660 0.17 +0.3
135,622 - ABZR87_RS00660 0.17 +1.9
135,622 - ABZR87_RS00660 0.17 -0.1
135,687 + ABZR87_RS00660 0.24 -0.2
135,688 - ABZR87_RS00660 0.24 -0.9
135,688 - ABZR87_RS00660 0.24 -0.2
135,774 + ABZR87_RS00660 0.33 +0.5
135,775 - ABZR87_RS00660 0.33 -0.4
135,849 + ABZR87_RS00660 0.41 +0.9
135,849 + ABZR87_RS00660 0.41 -0.5
135,849 + ABZR87_RS00660 0.41 +0.1
135,849 + ABZR87_RS00660 0.41 +0.3
135,849 + ABZR87_RS00660 0.41 +0.2
135,849 + ABZR87_RS00660 0.41 -0.1
135,850 - ABZR87_RS00660 0.41 +0.7
135,850 - ABZR87_RS00660 0.41 -0.7
135,850 - ABZR87_RS00660 0.41 -0.1
135,863 - ABZR87_RS00660 0.42 +0.4
136,090 + ABZR87_RS00660 0.66 -1.6
136,091 - ABZR87_RS00660 0.66 +0.4
136,091 - ABZR87_RS00660 0.66 +2.0
136,091 - ABZR87_RS00660 0.66 +1.4
136,091 - ABZR87_RS00660 0.66 +0.3
136,621 + ABZR87_RS00665 0.26 -0.4
136,622 - ABZR87_RS00665 0.26 +1.3
136,622 - ABZR87_RS00665 0.26 -0.6
137,129 + ABZR87_RS00665 0.89 -0.3
137,129 + ABZR87_RS00665 0.89 -1.6
137,263 + -0.3
137,263 + +0.0
137,263 + +0.4
137,263 + +0.0
137,263 + -0.1
137,264 - -0.6
137,264 - +1.1
137,264 - +1.8
137,290 + ABZR87_RS00670 0.12 +0.1
137,290 + ABZR87_RS00670 0.12 -1.5
137,291 - ABZR87_RS00670 0.12 +0.2
137,291 - ABZR87_RS00670 0.12 +0.8
137,291 - ABZR87_RS00670 0.12 +0.1
137,291 - ABZR87_RS00670 0.12 -0.3
137,312 - ABZR87_RS00670 0.15 +0.7
137,330 - ABZR87_RS00670 0.18 +0.8
137,572 + ABZR87_RS00670 0.54 -0.7
137,572 + ABZR87_RS00670 0.54 +0.1
137,573 - ABZR87_RS00670 0.54 -0.1
137,573 - ABZR87_RS00670 0.54 -0.9
137,573 - ABZR87_RS00670 0.54 -0.8
137,573 - ABZR87_RS00670 0.54 +1.2
137,573 - ABZR87_RS00670 0.54 +0.2
137,573 - ABZR87_RS00670 0.54 +0.4
137,573 - ABZR87_RS00670 0.54 -1.6
137,573 - ABZR87_RS00670 0.54 +1.6
137,573 - ABZR87_RS00670 0.54 +0.1
137,573 - ABZR87_RS00670 0.54 +1.7
137,573 - ABZR87_RS00670 0.54 -0.2
137,585 - ABZR87_RS00670 0.56 -1.1
137,704 + ABZR87_RS00670 0.74 -0.3
137,704 + ABZR87_RS00670 0.74 +0.8
137,704 + ABZR87_RS00670 0.74 +0.8
137,705 - ABZR87_RS00670 0.74 +0.3
137,705 - ABZR87_RS00670 0.74 -0.6
137,705 - ABZR87_RS00670 0.74 +0.0
137,723 - ABZR87_RS00670 0.77 -0.3
137,723 - ABZR87_RS00670 0.77 +0.5
137,899 + -1.7
137,899 + +1.0
137,899 + +0.6
137,900 - +1.5
137,941 + +0.3
137,941 + -0.1
138,025 + ABZR87_RS00675 0.17 +0.1
138,025 + ABZR87_RS00675 0.17 -0.5
138,026 - ABZR87_RS00675 0.17 -0.2
138,082 + ABZR87_RS00675 0.24 -0.0
138,083 - ABZR87_RS00675 0.24 +0.9
138,085 + ABZR87_RS00675 0.24 -0.6
138,085 + ABZR87_RS00675 0.24 -0.2
138,107 + ABZR87_RS00675 0.27 +2.2
138,190 + ABZR87_RS00675 0.38 +1.0
138,191 - ABZR87_RS00675 0.38 -0.8
138,205 + ABZR87_RS00675 0.40 -0.7
138,205 + ABZR87_RS00675 0.40 -0.0
138,205 + ABZR87_RS00675 0.40 -0.3
138,206 - ABZR87_RS00675 0.40 -0.2
138,206 - ABZR87_RS00675 0.40 +0.2

Or see this region's nucleotide sequence