Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00460

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00455 and ABZR87_RS00460 are separated by 766 nucleotidesABZR87_RS00460 and ABZR87_RS00465 are separated by 259 nucleotides ABZR87_RS00455: ABZR87_RS00455 - DUF4126 domain-containing protein, at 93,826 to 94,446 _RS00455 ABZR87_RS00460: ABZR87_RS00460 - NADP-dependent isocitrate dehydrogenase, at 95,213 to 96,463 _RS00460 ABZR87_RS00465: ABZR87_RS00465 - sorbitol dehydrogenase family protein, at 96,723 to 97,205 _RS00465 Position (kb) 95 96 97Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 94.507 kb on - strandat 94.523 kb on - strandat 94.524 kb on + strandat 94.524 kb on + strandat 94.524 kb on + strandat 94.525 kb on - strandat 94.525 kb on - strandat 94.525 kb on - strandat 94.525 kb on - strandat 94.559 kb on + strandat 94.560 kb on - strandat 94.621 kb on - strandat 94.622 kb on + strandat 94.623 kb on - strandat 94.623 kb on - strandat 94.642 kb on + strandat 94.642 kb on + strandat 94.642 kb on + strandat 94.642 kb on + strandat 94.642 kb on + strandat 94.642 kb on + strandat 94.643 kb on - strandat 94.643 kb on - strandat 94.643 kb on - strandat 94.643 kb on - strandat 94.643 kb on - strandat 94.643 kb on - strandat 94.643 kb on - strandat 94.643 kb on - strandat 94.643 kb on - strandat 94.663 kb on + strandat 94.663 kb on + strandat 94.729 kb on + strandat 94.729 kb on + strandat 94.729 kb on + strandat 94.730 kb on - strandat 94.731 kb on + strandat 94.731 kb on + strandat 94.732 kb on - strandat 94.732 kb on - strandat 94.732 kb on - strandat 95.088 kb on + strandat 95.088 kb on + strandat 95.142 kb on + strandat 95.214 kb on + strandat 95.214 kb on + strandat 95.214 kb on + strandat 95.214 kb on + strandat 95.214 kb on + strandat 95.214 kb on + strandat 95.214 kb on + strandat 95.214 kb on + strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.215 kb on - strandat 95.218 kb on + strandat 95.218 kb on + strandat 95.218 kb on + strandat 95.218 kb on + strandat 95.219 kb on - strandat 95.219 kb on - strandat 95.219 kb on - strandat 95.219 kb on - strandat 95.219 kb on - strandat 96.582 kb on - strandat 96.582 kb on - strandat 96.670 kb on + strandat 97.422 kb on + strandat 97.440 kb on + strandat 97.455 kb on + strandat 97.455 kb on + strandat 97.456 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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94,507 - +0.8
94,523 - +0.8
94,524 + -0.3
94,524 + -0.3
94,524 + -0.3
94,525 - +0.4
94,525 - -0.7
94,525 - -0.3
94,525 - +0.5
94,559 + -1.3
94,560 - +0.3
94,621 - -0.2
94,622 + -0.3
94,623 - +0.8
94,623 - +2.2
94,642 + -1.5
94,642 + -1.1
94,642 + +2.4
94,642 + +0.2
94,642 + -0.2
94,642 + -0.0
94,643 - +0.5
94,643 - +1.7
94,643 - -3.0
94,643 - -0.5
94,643 - -1.0
94,643 - -0.7
94,643 - -0.6
94,643 - -0.0
94,643 - +0.0
94,663 + +1.4
94,663 + -2.0
94,729 + -0.3
94,729 + -0.7
94,729 + +0.4
94,730 - -1.4
94,731 + +0.2
94,731 + +0.3
94,732 - +1.1
94,732 - -0.2
94,732 - -0.8
95,088 + +0.4
95,088 + +1.0
95,142 + -0.4
95,214 + +0.2
95,214 + +0.1
95,214 + +0.3
95,214 + -0.2
95,214 + -0.6
95,214 + +0.0
95,214 + -0.1
95,214 + -0.3
95,215 - -0.8
95,215 - -0.5
95,215 - -1.6
95,215 - +0.0
95,215 - -0.7
95,215 - +1.7
95,215 - +0.4
95,215 - -1.0
95,215 - +1.9
95,215 - +1.3
95,215 - -0.3
95,215 - +0.3
95,218 + +0.7
95,218 + -3.2
95,218 + -0.2
95,218 + -2.4
95,219 - -1.6
95,219 - -2.7
95,219 - -4.2
95,219 - +0.1
95,219 - -1.1
96,582 - +1.3
96,582 - -2.2
96,670 + -0.5
97,422 + -0.2
97,440 + +0.3
97,455 + +5.0
97,455 + +0.6
97,456 - +0.2

Or see this region's nucleotide sequence