Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23720 and HSERO_RS23725 are separated by 160 nucleotides HSERO_RS23725 and HSERO_RS23730 are separated by 210 nucleotides
HSERO_RS23720: HSERO_RS23720 - histidine kinase, at 5,436,598 to 5,438,076
_RS23720
HSERO_RS23725: HSERO_RS23725 - peptidase M20, at 5,438,237 to 5,439,481
_RS23725
HSERO_RS23730: HSERO_RS23730 - MFS transporter, at 5,439,692 to 5,441,119
_RS23730
Position (kb) 5438
5439
5440 Strain fitness (log2 ratio) -2
-1
0
1 at 5437.579 kb on - strand, within HSERO_RS23720 at 5437.633 kb on - strand, within HSERO_RS23720 at 5437.640 kb on - strand, within HSERO_RS23720 at 5437.709 kb on + strand, within HSERO_RS23720 at 5437.709 kb on + strand, within HSERO_RS23720 at 5437.709 kb on + strand, within HSERO_RS23720 at 5437.709 kb on + strand, within HSERO_RS23720 at 5437.717 kb on - strand at 5437.815 kb on - strand, within HSERO_RS23720 at 5437.862 kb on + strand, within HSERO_RS23720 at 5438.007 kb on + strand at 5438.066 kb on - strand at 5438.115 kb on - strand at 5438.139 kb on + strand at 5438.195 kb on - strand at 5438.274 kb on - strand at 5438.280 kb on + strand at 5438.297 kb on - strand at 5438.444 kb on + strand, within HSERO_RS23725 at 5438.755 kb on + strand, within HSERO_RS23725 at 5438.958 kb on - strand, within HSERO_RS23725 at 5439.077 kb on - strand, within HSERO_RS23725 at 5439.092 kb on + strand, within HSERO_RS23725 at 5439.216 kb on - strand, within HSERO_RS23725 at 5439.255 kb on - strand, within HSERO_RS23725 at 5439.351 kb on - strand, within HSERO_RS23725 at 5439.376 kb on + strand at 5439.494 kb on + strand at 5439.605 kb on + strand at 5439.645 kb on + strand at 5440.006 kb on + strand, within HSERO_RS23730 at 5440.087 kb on - strand, within HSERO_RS23730 at 5440.128 kb on - strand, within HSERO_RS23730 at 5440.287 kb on - strand, within HSERO_RS23730 at 5440.298 kb on + strand, within HSERO_RS23730 at 5440.310 kb on + strand, within HSERO_RS23730 at 5440.335 kb on + strand, within HSERO_RS23730 at 5440.335 kb on + strand, within HSERO_RS23730 at 5440.343 kb on - strand, within HSERO_RS23730 at 5440.357 kb on + strand, within HSERO_RS23730 at 5440.357 kb on + strand, within HSERO_RS23730 at 5440.365 kb on - strand, within HSERO_RS23730 at 5440.365 kb on - strand, within HSERO_RS23730 at 5440.423 kb on - strand, within HSERO_RS23730
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 5,437,579 - HSERO_RS23720 0.66 -0.8 5,437,633 - HSERO_RS23720 0.70 -0.2 5,437,640 - HSERO_RS23720 0.70 -0.0 5,437,709 + HSERO_RS23720 0.75 -0.6 5,437,709 + HSERO_RS23720 0.75 -0.7 5,437,709 + HSERO_RS23720 0.75 -0.5 5,437,709 + HSERO_RS23720 0.75 -0.8 5,437,717 - -1.0 5,437,815 - HSERO_RS23720 0.82 +0.3 5,437,862 + HSERO_RS23720 0.85 -1.0 5,438,007 + -1.0 5,438,066 - -0.1 5,438,115 - -0.2 5,438,139 + -0.4 5,438,195 - +1.0 5,438,274 - -0.3 5,438,280 + +0.3 5,438,297 - +0.2 5,438,444 + HSERO_RS23725 0.17 -0.4 5,438,755 + HSERO_RS23725 0.42 -0.1 5,438,958 - HSERO_RS23725 0.58 -0.1 5,439,077 - HSERO_RS23725 0.67 -0.7 5,439,092 + HSERO_RS23725 0.69 +0.0 5,439,216 - HSERO_RS23725 0.79 +0.1 5,439,255 - HSERO_RS23725 0.82 +0.3 5,439,351 - HSERO_RS23725 0.89 +0.1 5,439,376 + -0.1 5,439,494 + -1.8 5,439,605 + +0.2 5,439,645 + -0.5 5,440,006 + HSERO_RS23730 0.22 -0.5 5,440,087 - HSERO_RS23730 0.28 +0.2 5,440,128 - HSERO_RS23730 0.31 -0.2 5,440,287 - HSERO_RS23730 0.42 -0.5 5,440,298 + HSERO_RS23730 0.42 -0.1 5,440,310 + HSERO_RS23730 0.43 -0.2 5,440,335 + HSERO_RS23730 0.45 -0.1 5,440,335 + HSERO_RS23730 0.45 -0.1 5,440,343 - HSERO_RS23730 0.46 -2.2 5,440,357 + HSERO_RS23730 0.47 -0.2 5,440,357 + HSERO_RS23730 0.47 -0.0 5,440,365 - HSERO_RS23730 0.47 -0.4 5,440,365 - HSERO_RS23730 0.47 -0.2 5,440,423 - HSERO_RS23730 0.51 -0.3
Or see this region's nucleotide sequence