Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23705

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
5,433,946	+				-0.2
5,434,023	-				-0.2
5,434,036	-				-0.2
5,434,079	+				+0.3
5,434,088	+				+0.8
5,434,092	-				-0.5
5,434,106	-				-0.3
5,434,107	+				+0.2
5,434,118	+				-0.2
5,434,203	-		HSERO_RS23705	0.33	-0.3
5,434,209	+		HSERO_RS23705	0.35	+0.1
5,434,272	+		HSERO_RS23705	0.53	+0.5
5,434,272	+		HSERO_RS23705	0.53	-0.8
5,434,272	+				+1.8
5,434,280	-		HSERO_RS23705	0.56	-0.1
5,434,466	-				+0.6
5,434,468	+				-0.2
5,434,470	+				+0.3
5,434,473	-				+0.2
5,434,479	-				-0.3
5,434,501	-				-0.4
5,434,873	+		HSERO_RS23710	0.14	+0.6
5,434,917	-		HSERO_RS23710	0.18	-0.2
5,434,956	+		HSERO_RS23710	0.20	-0.0
5,435,087	-		HSERO_RS23710	0.30	-0.6
5,435,268	-				+0.8
5,435,307	+		HSERO_RS23710	0.46	-0.5
5,435,315	-		HSERO_RS23710	0.46	+0.0
5,435,386	-		HSERO_RS23710	0.52	-0.2
5,435,386	-		HSERO_RS23710	0.52	-0.3