Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21165

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
4,840,854	+		HSERO_RS21160	0.23	+0.5
4,840,886	+		HSERO_RS21160	0.26	-0.7
4,840,971	-		HSERO_RS21160	0.36	-0.0
4,841,206	-		HSERO_RS21160	0.62	+2.0
4,841,348	-		HSERO_RS21160	0.78	+0.2
4,841,355	-		HSERO_RS21160	0.79	+0.1
4,841,506	-				-0.2
4,841,507	-				-1.4
4,841,740	-				-0.2
4,841,769	+				+0.3
4,841,971	+		HSERO_RS21165	0.31	-0.3
4,841,990	+		HSERO_RS21165	0.33	-0.2
4,841,998	-		HSERO_RS21165	0.35	-0.5
4,842,104	+		HSERO_RS21165	0.50	-0.3
4,842,172	-		HSERO_RS21165	0.59	-0.8
4,842,317	-		HSERO_RS21165	0.80	+0.5
4,842,350	-		HSERO_RS21165	0.85	+0.1
4,842,419	+				+0.0
4,842,552	-				-1.0
4,842,621	+				+1.5
4,842,824	-		HSERO_RS21170	0.12	-0.4
4,842,882	-		HSERO_RS21170	0.18	+0.2
4,842,882	-		HSERO_RS21170	0.18	-0.3
4,843,024	-		HSERO_RS21170	0.33	-0.1
4,843,135	+		HSERO_RS21170	0.45	-1.5
4,843,135	+		HSERO_RS21170	0.45	+0.5
4,843,143	-		HSERO_RS21170	0.46	-0.2
4,843,143	-		HSERO_RS21170	0.46	+0.5
4,843,143	-		HSERO_RS21170	0.46	-0.4