Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17500

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
4,012,949	+		HSERO_RS17495	0.13	+0.3
4,013,017	-		HSERO_RS17495	0.21	-0.3
4,013,031	+		HSERO_RS17495	0.23	-0.9
4,013,108	+		HSERO_RS17495	0.31	-0.6
4,013,213	-				-0.4
4,013,258	-		HSERO_RS17495	0.48	+0.2
4,013,339	-		HSERO_RS17495	0.57	+0.1
4,013,368	+		HSERO_RS17495	0.60	-0.2
4,013,370	-		HSERO_RS17495	0.60	+0.4
4,013,503	-		HSERO_RS17495	0.75	+0.2
4,013,561	-		HSERO_RS17495	0.82	+0.3
4,013,636	+				+0.3
4,013,641	+				-1.3
4,013,662	-				-0.3
4,013,733	+				-0.1
4,013,741	-				+0.1
4,013,748	+				-0.1
4,014,048	-		HSERO_RS17500	0.50	-0.6
4,014,161	+		HSERO_RS17500	0.76	-0.9
4,014,162	+		HSERO_RS17500	0.76	-0.3
4,014,217	-		HSERO_RS17500	0.88	-0.8
4,014,521	-				-1.3
4,014,590	+				-0.2
4,014,628	-				-0.3
4,014,806	+		HSERO_RS17505	0.15	+0.2
4,014,883	-		HSERO_RS17505	0.18	-0.4
4,014,884	+		HSERO_RS17505	0.18	+0.5
4,014,920	-		HSERO_RS17505	0.20	+0.2
4,015,183	+		HSERO_RS17505	0.32	-0.2
4,015,262	+		HSERO_RS17505	0.35	+0.1