Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11125

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
2,507,864	+				-0.4
2,507,963	+		HSERO_RS11120	0.18	-0.3
2,507,996	-		HSERO_RS11120	0.22	+0.7
2,508,020	-		HSERO_RS11120	0.24	-0.3
2,508,173	+		HSERO_RS11120	0.39	-0.3
2,508,272	+		HSERO_RS11120	0.49	-0.2
2,508,359	+		HSERO_RS11120	0.58	+0.2
2,508,530	-		HSERO_RS11120	0.75	-0.1
2,508,660	+		HSERO_RS11120	0.87	+0.8
2,508,660	+		HSERO_RS11120	0.87	-0.3
2,508,660	+		HSERO_RS11120	0.87	+0.5
2,508,668	-		HSERO_RS11120	0.88	-0.2
2,508,772	-				+1.0
2,508,993	-		HSERO_RS11125	0.12	-0.4
2,509,143	+		HSERO_RS11125	0.21	-0.7
2,509,143	+		HSERO_RS11125	0.21	-0.1
2,509,151	-		HSERO_RS11125	0.21	+0.1
2,509,200	+		HSERO_RS11125	0.24	-0.6
2,509,316	-		HSERO_RS11125	0.31	-0.6
2,509,345	-		HSERO_RS11125	0.33	-0.2
2,509,583	-		HSERO_RS11125	0.47	-0.1
2,509,588	-		HSERO_RS11125	0.47	-0.1
2,509,649	-		HSERO_RS11125	0.51	-0.6
2,509,653	+		HSERO_RS11125	0.51	+0.2
2,509,668	+		HSERO_RS11125	0.52	-0.3
2,509,731	-		HSERO_RS11125	0.56	-0.5
2,509,834	+		HSERO_RS11125	0.62	-0.8
2,509,914	+		HSERO_RS11125	0.67	-1.1
2,509,979	-		HSERO_RS11125	0.71	-0.9
2,510,150	+		HSERO_RS11125	0.81	+0.2
2,510,219	+		HSERO_RS11125	0.85	-0.6
2,510,302	-				-0.9
2,510,429	+				-0.4
2,510,436	+				+0.1
2,510,438	+				-0.5
2,510,458	-				-1.4
2,510,726	+				+0.5
2,510,773	+				-0.2
2,510,832	+				-1.1
2,510,902	+				+2.1
2,510,928	+				-0.4
2,510,941	+				-0.1
2,510,967	-				+1.7
2,511,037	+		HSERO_RS11130	0.11	-0.9
2,511,241	-		HSERO_RS11130	0.28	+0.1
2,511,250	+		HSERO_RS11130	0.29	+0.0
2,511,390	-		HSERO_RS11130	0.40	+0.1