Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05070

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,118,399	-				-0.2
1,118,448	-		HSERO_RS05065	0.11	+0.0
1,118,733	-		HSERO_RS05065	0.40	+0.3
1,118,783	+		HSERO_RS05065	0.45	-0.2
1,118,810	+				-1.6
1,118,818	-		HSERO_RS05065	0.49	+0.2
1,118,829	+		HSERO_RS05065	0.50	-1.8
1,118,855	-		HSERO_RS05065	0.53	+0.7
1,118,905	+		HSERO_RS05065	0.58	+0.9
1,119,128	+		HSERO_RS05065	0.80	+1.0
1,119,446	-		HSERO_RS05070	0.13	+0.0
1,119,451	-		HSERO_RS05070	0.14	+0.2
1,119,526	-		HSERO_RS05070	0.22	-0.7
1,119,661	+		HSERO_RS05070	0.36	-0.1
1,119,750	-		HSERO_RS05070	0.45	-1.1
1,119,852	+		HSERO_RS05070	0.56	+0.6
1,119,876	-		HSERO_RS05070	0.58	+0.1
1,119,905	-		HSERO_RS05070	0.61	+0.0
1,119,983	-		HSERO_RS05070	0.69	+1.0
1,120,035	-		HSERO_RS05070	0.75	-0.4
1,120,042	+		HSERO_RS05070	0.75	-0.9
1,120,053	+		HSERO_RS05070	0.77	-0.1
1,120,061	-		HSERO_RS05070	0.77	+0.3
1,120,061	-		HSERO_RS05070	0.77	-0.1
1,120,211	+				-0.4
1,120,237	+				+0.2
1,120,237	+				+0.3
1,120,274	+				-0.1
1,120,370	+				+1.1
1,120,402	+				-0.0
1,120,411	-				+0.2
1,120,428	+				+0.5
1,120,518	+				-0.8
1,120,519	+				-0.8
1,120,585	+				+0.9
1,120,588	+				+0.0
1,120,634	+				+0.9
1,120,642	-				+0.8
1,120,657	-				+0.2
1,120,678	+				-0.6
1,120,678	-				+0.0
1,120,681	+				+0.1
1,120,782	-				-0.3
1,120,784	+				+0.6
1,120,792	-				-0.8
1,120,792	-				+0.1
1,120,792	-				+0.8
1,120,792	-				+1.3
1,120,819	-				-0.3
1,120,824	-				+0.9
1,120,906	-				-0.2
1,120,906	-				-0.6
1,120,912	-				-0.1
1,120,918	-				+1.0
1,120,987	-				-0.0
1,121,023	+				+0.4
1,121,028	-				-0.4
1,121,188	+				-0.4
1,121,206	-				+0.2
1,121,213	+				+0.1