Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27715 and BWI76_RS27720 are separated by 249 nucleotides BWI76_RS27720 and BWI76_RS27725 are separated by 3 nucleotides BWI76_RS27725 and BWI76_RS27730 overlap by 1 nucleotides
BWI76_RS27715: BWI76_RS27715 - PTS N-acetylmuramic acid transporter subunits IIBC, at 5,752,134 to 5,753,567
_RS27715
BWI76_RS27720: BWI76_RS27720 - carboxylate/amino acid/amine transporter, at 5,753,817 to 5,754,719
_RS27720
BWI76_RS27725: BWI76_RS27725 - hypothetical protein, at 5,754,723 to 5,754,980
_RS27725
BWI76_RS27730: BWI76_RS27730 - ISNCY family transposase, at 5,754,980 to 5,755,933
_RS27730
Position (kb)
5753
5754
5755 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 5753.007 kb on - strand, within BWI76_RS27715 at 5753.018 kb on + strand, within BWI76_RS27715 at 5753.046 kb on - strand, within BWI76_RS27715 at 5753.096 kb on - strand, within BWI76_RS27715 at 5753.110 kb on + strand, within BWI76_RS27715 at 5753.120 kb on + strand, within BWI76_RS27715 at 5753.142 kb on - strand, within BWI76_RS27715 at 5753.180 kb on + strand, within BWI76_RS27715 at 5753.193 kb on - strand, within BWI76_RS27715 at 5753.531 kb on - strand at 5753.531 kb on - strand at 5753.681 kb on + strand at 5753.716 kb on + strand at 5753.724 kb on - strand at 5753.724 kb on - strand at 5753.798 kb on + strand at 5753.857 kb on + strand at 5753.883 kb on - strand at 5753.943 kb on + strand, within BWI76_RS27720 at 5753.992 kb on + strand, within BWI76_RS27720 at 5754.116 kb on + strand, within BWI76_RS27720 at 5754.196 kb on - strand, within BWI76_RS27720 at 5754.288 kb on + strand, within BWI76_RS27720 at 5754.293 kb on + strand, within BWI76_RS27720 at 5754.293 kb on + strand, within BWI76_RS27720 at 5754.296 kb on - strand, within BWI76_RS27720 at 5754.301 kb on - strand, within BWI76_RS27720 at 5754.301 kb on - strand, within BWI76_RS27720 at 5754.457 kb on + strand, within BWI76_RS27720 at 5754.502 kb on - strand, within BWI76_RS27720 at 5754.511 kb on + strand, within BWI76_RS27720 at 5754.519 kb on - strand, within BWI76_RS27720 at 5754.519 kb on - strand, within BWI76_RS27720 at 5754.582 kb on - strand, within BWI76_RS27720 at 5754.602 kb on - strand, within BWI76_RS27720 at 5754.625 kb on + strand, within BWI76_RS27720 at 5754.869 kb on + strand at 5754.898 kb on + strand at 5754.963 kb on + strand at 5755.016 kb on - strand at 5755.039 kb on + strand at 5755.231 kb on + strand, within BWI76_RS27730 at 5755.239 kb on - strand, within BWI76_RS27730 at 5755.290 kb on - strand, within BWI76_RS27730 at 5755.295 kb on - strand, within BWI76_RS27730 at 5755.315 kb on + strand, within BWI76_RS27730 at 5755.434 kb on - strand, within BWI76_RS27730 at 5755.539 kb on + strand, within BWI76_RS27730 at 5755.568 kb on - strand, within BWI76_RS27730 at 5755.671 kb on + strand, within BWI76_RS27730 at 5755.676 kb on + strand, within BWI76_RS27730 at 5755.684 kb on - strand, within BWI76_RS27730 at 5755.701 kb on + strand, within BWI76_RS27730
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 5,753,007 - BWI76_RS27715 0.61 +0.7 5,753,018 + BWI76_RS27715 0.62 +0.2 5,753,046 - BWI76_RS27715 0.64 +1.2 5,753,096 - BWI76_RS27715 0.67 -1.3 5,753,110 + BWI76_RS27715 0.68 -0.9 5,753,120 + BWI76_RS27715 0.69 +0.4 5,753,142 - BWI76_RS27715 0.70 +4.8 5,753,180 + BWI76_RS27715 0.73 +0.6 5,753,193 - BWI76_RS27715 0.74 +0.5 5,753,531 - +0.3 5,753,531 - -0.1 5,753,681 + -1.3 5,753,716 + +0.1 5,753,724 - -1.8 5,753,724 - +1.0 5,753,798 + -0.9 5,753,857 + -0.6 5,753,883 - -0.3 5,753,943 + BWI76_RS27720 0.14 -1.3 5,753,992 + BWI76_RS27720 0.19 -0.7 5,754,116 + BWI76_RS27720 0.33 -0.6 5,754,196 - BWI76_RS27720 0.42 +0.3 5,754,288 + BWI76_RS27720 0.52 -0.7 5,754,293 + BWI76_RS27720 0.53 -0.1 5,754,293 + BWI76_RS27720 0.53 +0.5 5,754,296 - BWI76_RS27720 0.53 -0.4 5,754,301 - BWI76_RS27720 0.54 -0.1 5,754,301 - BWI76_RS27720 0.54 -0.7 5,754,457 + BWI76_RS27720 0.71 -0.5 5,754,502 - BWI76_RS27720 0.76 +1.8 5,754,511 + BWI76_RS27720 0.77 +0.6 5,754,519 - BWI76_RS27720 0.78 -0.9 5,754,519 - BWI76_RS27720 0.78 -1.2 5,754,582 - BWI76_RS27720 0.85 +0.8 5,754,602 - BWI76_RS27720 0.87 +0.1 5,754,625 + BWI76_RS27720 0.89 -1.3 5,754,869 + +0.8 5,754,898 + +2.8 5,754,963 + -0.2 5,755,016 - +0.7 5,755,039 + -0.6 5,755,231 + BWI76_RS27730 0.26 +1.3 5,755,239 - BWI76_RS27730 0.27 -0.7 5,755,290 - BWI76_RS27730 0.32 +0.5 5,755,295 - BWI76_RS27730 0.33 +1.3 5,755,315 + BWI76_RS27730 0.35 +0.2 5,755,434 - BWI76_RS27730 0.48 -0.9 5,755,539 + BWI76_RS27730 0.59 +0.5 5,755,568 - BWI76_RS27730 0.62 +2.5 5,755,671 + BWI76_RS27730 0.72 +0.5 5,755,676 + BWI76_RS27730 0.73 -0.2 5,755,684 - BWI76_RS27730 0.74 -1.2 5,755,701 + BWI76_RS27730 0.76 -0.3
Or see this region's nucleotide sequence