Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26840 and BWI76_RS26845 overlap by 4 nucleotides BWI76_RS26845 and BWI76_RS26850 overlap by 4 nucleotides
BWI76_RS26840: BWI76_RS26840 - cellulose synthase, at 5,562,868 to 5,566,920
_RS26840
BWI76_RS26845: BWI76_RS26845 - cellulose synthase regulator BcsB, at 5,566,917 to 5,569,319
_RS26845
BWI76_RS26850: BWI76_RS26850 - cellulose synthase catalytic subunit (UDP-forming), at 5,569,316 to 5,571,427
_RS26850
Position (kb) 5566
5567
5568
5569
5570 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5565.968 kb on + strand, within BWI76_RS26840 at 5565.973 kb on + strand, within BWI76_RS26840 at 5565.981 kb on - strand, within BWI76_RS26840 at 5566.046 kb on - strand, within BWI76_RS26840 at 5566.080 kb on + strand, within BWI76_RS26840 at 5566.085 kb on + strand, within BWI76_RS26840 at 5566.085 kb on + strand, within BWI76_RS26840 at 5566.160 kb on - strand, within BWI76_RS26840 at 5566.198 kb on - strand, within BWI76_RS26840 at 5566.208 kb on + strand, within BWI76_RS26840 at 5566.321 kb on + strand, within BWI76_RS26840 at 5566.321 kb on + strand, within BWI76_RS26840 at 5566.429 kb on + strand, within BWI76_RS26840 at 5566.503 kb on + strand, within BWI76_RS26840 at 5566.542 kb on - strand at 5566.542 kb on - strand at 5566.705 kb on + strand at 5566.849 kb on - strand at 5566.867 kb on - strand at 5566.936 kb on - strand at 5567.124 kb on - strand at 5567.328 kb on + strand, within BWI76_RS26845 at 5567.518 kb on - strand, within BWI76_RS26845 at 5567.791 kb on - strand, within BWI76_RS26845 at 5567.810 kb on - strand, within BWI76_RS26845 at 5567.816 kb on + strand, within BWI76_RS26845 at 5567.911 kb on + strand, within BWI76_RS26845 at 5567.914 kb on - strand, within BWI76_RS26845 at 5567.965 kb on + strand, within BWI76_RS26845 at 5568.002 kb on + strand, within BWI76_RS26845 at 5568.239 kb on + strand, within BWI76_RS26845 at 5568.247 kb on - strand, within BWI76_RS26845 at 5568.281 kb on + strand, within BWI76_RS26845 at 5568.721 kb on + strand, within BWI76_RS26845 at 5568.731 kb on + strand, within BWI76_RS26845 at 5568.965 kb on + strand, within BWI76_RS26845 at 5569.334 kb on - strand at 5569.336 kb on + strand at 5569.392 kb on + strand at 5569.392 kb on + strand at 5569.392 kb on + strand at 5569.400 kb on - strand at 5569.400 kb on - strand at 5569.472 kb on - strand at 5569.495 kb on - strand at 5569.587 kb on + strand, within BWI76_RS26850 at 5569.618 kb on + strand, within BWI76_RS26850 at 5569.626 kb on - strand, within BWI76_RS26850 at 5569.969 kb on + strand, within BWI76_RS26850 at 5570.048 kb on - strand, within BWI76_RS26850 at 5570.276 kb on + strand, within BWI76_RS26850 at 5570.300 kb on - strand, within BWI76_RS26850 at 5570.308 kb on + strand, within BWI76_RS26850
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 5,565,968 + BWI76_RS26840 0.76 -0.3 5,565,973 + BWI76_RS26840 0.77 +1.8 5,565,981 - BWI76_RS26840 0.77 +1.0 5,566,046 - BWI76_RS26840 0.78 -0.2 5,566,080 + BWI76_RS26840 0.79 +0.1 5,566,085 + BWI76_RS26840 0.79 -0.5 5,566,085 + BWI76_RS26840 0.79 -0.4 5,566,160 - BWI76_RS26840 0.81 +0.4 5,566,198 - BWI76_RS26840 0.82 +0.0 5,566,208 + BWI76_RS26840 0.82 +0.5 5,566,321 + BWI76_RS26840 0.85 -0.5 5,566,321 + BWI76_RS26840 0.85 -1.1 5,566,429 + BWI76_RS26840 0.88 -0.2 5,566,503 + BWI76_RS26840 0.90 -0.9 5,566,542 - +0.3 5,566,542 - -0.7 5,566,705 + +0.4 5,566,849 - -1.1 5,566,867 - -1.2 5,566,936 - +0.7 5,567,124 - -0.1 5,567,328 + BWI76_RS26845 0.17 +0.2 5,567,518 - BWI76_RS26845 0.25 +3.0 5,567,791 - BWI76_RS26845 0.36 -0.4 5,567,810 - BWI76_RS26845 0.37 -0.7 5,567,816 + BWI76_RS26845 0.37 -0.3 5,567,911 + BWI76_RS26845 0.41 -0.2 5,567,914 - BWI76_RS26845 0.41 +0.6 5,567,965 + BWI76_RS26845 0.44 -0.2 5,568,002 + BWI76_RS26845 0.45 +1.7 5,568,239 + BWI76_RS26845 0.55 -0.6 5,568,247 - BWI76_RS26845 0.55 +0.3 5,568,281 + BWI76_RS26845 0.57 +0.5 5,568,721 + BWI76_RS26845 0.75 +0.4 5,568,731 + BWI76_RS26845 0.75 +1.3 5,568,965 + BWI76_RS26845 0.85 +0.3 5,569,334 - +1.2 5,569,336 + -1.5 5,569,392 + +0.5 5,569,392 + -0.5 5,569,392 + +2.1 5,569,400 - +0.6 5,569,400 - +0.1 5,569,472 - -0.4 5,569,495 - +0.2 5,569,587 + BWI76_RS26850 0.13 -0.1 5,569,618 + BWI76_RS26850 0.14 +0.1 5,569,626 - BWI76_RS26850 0.15 +1.1 5,569,969 + BWI76_RS26850 0.31 -2.3 5,570,048 - BWI76_RS26850 0.35 +0.1 5,570,276 + BWI76_RS26850 0.45 -0.4 5,570,300 - BWI76_RS26850 0.47 -0.1 5,570,308 + BWI76_RS26850 0.47 -2.1
Or see this region's nucleotide sequence