Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26510 and BWI76_RS26515 overlap by 1 nucleotides BWI76_RS26515 and BWI76_RS26520 overlap by 1 nucleotides BWI76_RS26520 and BWI76_RS26525 are separated by 5 nucleotides BWI76_RS26525 and BWI76_RS26530 are separated by 404 nucleotides
BWI76_RS26510: BWI76_RS26510 - nickel ABC transporter permease subunit NikC, at 5,487,484 to 5,488,317
_RS26510
BWI76_RS26515: BWI76_RS26515 - nickel import ATP-binding protein NikD, at 5,488,317 to 5,489,078
_RS26515
BWI76_RS26520: BWI76_RS26520 - nickel import ATP-binding protein NikE, at 5,489,078 to 5,489,848
_RS26520
BWI76_RS26525: BWI76_RS26525 - nickel-responsive transcriptional regulator NikR, at 5,489,854 to 5,490,270
_RS26525
BWI76_RS26530: BWI76_RS26530 - MgtE integral membrane protein, at 5,490,675 to 5,491,688
_RS26530
Position (kb) 5489
5490 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5488.194 kb on - strand, within BWI76_RS26510 at 5488.222 kb on - strand, within BWI76_RS26510 at 5488.246 kb on + strand at 5488.355 kb on + strand at 5488.588 kb on + strand, within BWI76_RS26515 at 5488.596 kb on - strand, within BWI76_RS26515 at 5488.796 kb on + strand, within BWI76_RS26515 at 5488.972 kb on + strand, within BWI76_RS26515 at 5488.980 kb on - strand, within BWI76_RS26515 at 5489.080 kb on - strand at 5489.089 kb on - strand at 5489.140 kb on + strand at 5489.338 kb on - strand, within BWI76_RS26520 at 5489.343 kb on + strand, within BWI76_RS26520 at 5489.401 kb on - strand, within BWI76_RS26520 at 5489.443 kb on - strand, within BWI76_RS26520 at 5489.460 kb on - strand, within BWI76_RS26520 at 5489.493 kb on - strand, within BWI76_RS26520 at 5489.493 kb on - strand, within BWI76_RS26520 at 5489.526 kb on - strand, within BWI76_RS26520 at 5489.875 kb on - strand at 5489.914 kb on - strand, within BWI76_RS26525 at 5489.956 kb on + strand, within BWI76_RS26525 at 5490.001 kb on + strand, within BWI76_RS26525 at 5490.001 kb on + strand, within BWI76_RS26525 at 5490.009 kb on - strand, within BWI76_RS26525 at 5490.009 kb on - strand, within BWI76_RS26525 at 5490.107 kb on + strand, within BWI76_RS26525 at 5490.202 kb on + strand, within BWI76_RS26525 at 5490.264 kb on + strand at 5490.264 kb on + strand at 5490.264 kb on + strand at 5490.266 kb on + strand at 5490.272 kb on - strand at 5490.272 kb on - strand at 5490.575 kb on + strand at 5490.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 5,488,194 - BWI76_RS26510 0.85 +1.3 5,488,222 - BWI76_RS26510 0.88 -1.1 5,488,246 + +0.5 5,488,355 + -0.2 5,488,588 + BWI76_RS26515 0.36 -0.2 5,488,596 - BWI76_RS26515 0.37 -0.2 5,488,796 + BWI76_RS26515 0.63 -0.4 5,488,972 + BWI76_RS26515 0.86 +1.0 5,488,980 - BWI76_RS26515 0.87 -1.0 5,489,080 - +1.1 5,489,089 - +0.2 5,489,140 + +0.1 5,489,338 - BWI76_RS26520 0.34 -1.0 5,489,343 + BWI76_RS26520 0.34 -1.0 5,489,401 - BWI76_RS26520 0.42 -0.8 5,489,443 - BWI76_RS26520 0.47 -2.2 5,489,460 - BWI76_RS26520 0.50 -1.1 5,489,493 - BWI76_RS26520 0.54 +0.0 5,489,493 - BWI76_RS26520 0.54 +0.2 5,489,526 - BWI76_RS26520 0.58 -0.8 5,489,875 - +0.5 5,489,914 - BWI76_RS26525 0.14 +0.2 5,489,956 + BWI76_RS26525 0.24 -1.0 5,490,001 + BWI76_RS26525 0.35 +0.8 5,490,001 + BWI76_RS26525 0.35 -1.4 5,490,009 - BWI76_RS26525 0.37 +1.3 5,490,009 - BWI76_RS26525 0.37 -1.9 5,490,107 + BWI76_RS26525 0.61 -0.3 5,490,202 + BWI76_RS26525 0.83 -0.0 5,490,264 + +0.4 5,490,264 + -0.2 5,490,264 + -0.7 5,490,266 + +0.2 5,490,272 - +2.1 5,490,272 - +0.4 5,490,575 + -0.6 5,490,751 - +0.4
Or see this region's nucleotide sequence