Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25695

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS25685 and BWI76_RS25690 are separated by 140 nucleotidesBWI76_RS25690 and BWI76_RS25695 overlap by 47 nucleotidesBWI76_RS25695 and BWI76_RS25700 are separated by 58 nucleotidesBWI76_RS25700 and BWI76_RS25705 are separated by 2 nucleotidesBWI76_RS25705 and BWI76_RS25710 are separated by 107 nucleotides BWI76_RS25685: BWI76_RS25685 - Trk system potassium transport protein TrkA, at 5,333,147 to 5,334,523 _RS25685 BWI76_RS25690: BWI76_RS25690 - large-conductance mechanosensitive channel, at 5,334,664 to 5,335,077 _RS25690 BWI76_RS25695: BWI76_RS25695 - ribosome alternative rescue factor ArfA, at 5,335,031 to 5,335,291 _RS25695 BWI76_RS25700: BWI76_RS25700 - heavy metal-responsive transcriptional regulator, at 5,335,350 to 5,335,775 _RS25700 BWI76_RS25705: BWI76_RS25705 - hypothetical protein, at 5,335,778 to 5,336,146 _RS25705 BWI76_RS25710: BWI76_RS25710 - 50S ribosomal protein L17, at 5,336,254 to 5,336,640 _RS25710 Position (kb) 5335 5336Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5334.496 kb on + strandat 5334.515 kb on + strandat 5334.538 kb on - strandat 5334.545 kb on + strandat 5334.638 kb on + strandat 5334.638 kb on + strandat 5334.638 kb on + strandat 5334.638 kb on + strandat 5334.638 kb on + strandat 5334.646 kb on - strandat 5334.646 kb on - strandat 5334.646 kb on - strandat 5334.647 kb on + strandat 5334.730 kb on + strand, within BWI76_RS25690at 5334.745 kb on + strand, within BWI76_RS25690at 5334.745 kb on + strand, within BWI76_RS25690at 5334.748 kb on - strand, within BWI76_RS25690at 5334.793 kb on + strand, within BWI76_RS25690at 5334.799 kb on + strand, within BWI76_RS25690at 5334.801 kb on - strand, within BWI76_RS25690at 5334.829 kb on - strand, within BWI76_RS25690at 5334.851 kb on - strand, within BWI76_RS25690at 5334.852 kb on + strand, within BWI76_RS25690at 5334.854 kb on + strand, within BWI76_RS25690at 5334.874 kb on + strand, within BWI76_RS25690at 5334.874 kb on + strand, within BWI76_RS25690at 5334.874 kb on - strand, within BWI76_RS25690at 5334.882 kb on + strand, within BWI76_RS25690at 5334.997 kb on + strand, within BWI76_RS25690at 5335.000 kb on + strand, within BWI76_RS25690at 5335.001 kb on + strand, within BWI76_RS25690at 5335.006 kb on + strand, within BWI76_RS25690at 5335.019 kb on + strand, within BWI76_RS25690at 5335.032 kb on - strandat 5335.032 kb on - strandat 5335.032 kb on - strandat 5335.127 kb on + strand, within BWI76_RS25695at 5335.136 kb on - strand, within BWI76_RS25695at 5335.143 kb on - strand, within BWI76_RS25695at 5335.189 kb on - strand, within BWI76_RS25695at 5335.189 kb on - strand, within BWI76_RS25695at 5335.209 kb on - strand, within BWI76_RS25695at 5335.226 kb on + strand, within BWI76_RS25695at 5335.248 kb on - strand, within BWI76_RS25695at 5335.269 kb on + strandat 5335.277 kb on - strandat 5335.287 kb on + strandat 5335.305 kb on - strandat 5335.326 kb on + strandat 5335.326 kb on + strandat 5335.326 kb on + strandat 5335.326 kb on + strandat 5335.334 kb on - strandat 5335.416 kb on + strand, within BWI76_RS25700at 5335.424 kb on - strand, within BWI76_RS25700at 5335.424 kb on - strand, within BWI76_RS25700at 5335.424 kb on - strand, within BWI76_RS25700at 5335.512 kb on + strand, within BWI76_RS25700at 5335.520 kb on - strand, within BWI76_RS25700at 5335.525 kb on - strand, within BWI76_RS25700at 5335.600 kb on + strand, within BWI76_RS25700at 5335.691 kb on + strand, within BWI76_RS25700at 5335.858 kb on + strand, within BWI76_RS25705at 5335.891 kb on + strand, within BWI76_RS25705at 5335.913 kb on + strand, within BWI76_RS25705at 5336.028 kb on - strand, within BWI76_RS25705at 5336.099 kb on - strand, within BWI76_RS25705

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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5,334,496 + -0.6
5,334,515 + -0.1
5,334,538 - +1.1
5,334,545 + -0.5
5,334,638 + -0.9
5,334,638 + -0.2
5,334,638 + -0.9
5,334,638 + +0.0
5,334,638 + -0.3
5,334,646 - -1.7
5,334,646 - +1.2
5,334,646 - +1.2
5,334,647 + -0.3
5,334,730 + BWI76_RS25690 0.16 -1.9
5,334,745 + BWI76_RS25690 0.20 +1.3
5,334,745 + BWI76_RS25690 0.20 +0.1
5,334,748 - BWI76_RS25690 0.20 +0.4
5,334,793 + BWI76_RS25690 0.31 -0.9
5,334,799 + BWI76_RS25690 0.33 +1.0
5,334,801 - BWI76_RS25690 0.33 +0.9
5,334,829 - BWI76_RS25690 0.40 +0.4
5,334,851 - BWI76_RS25690 0.45 -0.1
5,334,852 + BWI76_RS25690 0.45 +0.2
5,334,854 + BWI76_RS25690 0.46 +0.7
5,334,874 + BWI76_RS25690 0.51 -0.0
5,334,874 + BWI76_RS25690 0.51 -0.4
5,334,874 - BWI76_RS25690 0.51 -0.2
5,334,882 + BWI76_RS25690 0.53 -1.0
5,334,997 + BWI76_RS25690 0.80 -0.2
5,335,000 + BWI76_RS25690 0.81 -0.2
5,335,001 + BWI76_RS25690 0.81 -0.0
5,335,006 + BWI76_RS25690 0.83 +0.8
5,335,019 + BWI76_RS25690 0.86 +0.9
5,335,032 - -1.6
5,335,032 - +0.9
5,335,032 - +0.8
5,335,127 + BWI76_RS25695 0.37 -0.9
5,335,136 - BWI76_RS25695 0.40 -0.9
5,335,143 - BWI76_RS25695 0.43 -0.5
5,335,189 - BWI76_RS25695 0.61 -3.2
5,335,189 - BWI76_RS25695 0.61 -1.1
5,335,209 - BWI76_RS25695 0.68 -1.1
5,335,226 + BWI76_RS25695 0.75 -1.5
5,335,248 - BWI76_RS25695 0.83 -1.6
5,335,269 + -0.0
5,335,277 - +2.8
5,335,287 + +1.0
5,335,305 - +1.2
5,335,326 + -2.4
5,335,326 + -3.5
5,335,326 + -1.2
5,335,326 + -2.4
5,335,334 - -0.7
5,335,416 + BWI76_RS25700 0.15 +0.6
5,335,424 - BWI76_RS25700 0.17 -0.1
5,335,424 - BWI76_RS25700 0.17 -0.2
5,335,424 - BWI76_RS25700 0.17 -0.5
5,335,512 + BWI76_RS25700 0.38 +0.8
5,335,520 - BWI76_RS25700 0.40 +0.9
5,335,525 - BWI76_RS25700 0.41 +0.3
5,335,600 + BWI76_RS25700 0.59 +0.6
5,335,691 + BWI76_RS25700 0.80 -0.6
5,335,858 + BWI76_RS25705 0.22 -1.1
5,335,891 + BWI76_RS25705 0.31 -0.9
5,335,913 + BWI76_RS25705 0.37 +0.1
5,336,028 - BWI76_RS25705 0.68 +0.0
5,336,099 - BWI76_RS25705 0.87 +0.2

Or see this region's nucleotide sequence