Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24805 and BWI76_RS24810 are separated by 0 nucleotides BWI76_RS24810 and BWI76_RS24820 are separated by 412 nucleotides BWI76_RS24820 and BWI76_RS24825 are separated by 65 nucleotides BWI76_RS24825 and BWI76_RS24830 are separated by 28 nucleotides
BWI76_RS24805: BWI76_RS24805 - hypothetical protein, at 5,170,237 to 5,170,623
_RS24805
BWI76_RS24810: BWI76_RS24810 - hypothetical protein, at 5,170,624 to 5,171,010
_RS24810
BWI76_RS24820: BWI76_RS24820 - glycerate 2-kinase, at 5,171,423 to 5,172,568
_RS24820
BWI76_RS24825: BWI76_RS24825 - 2-hydroxy-3-oxopropionate reductase, at 5,172,634 to 5,173,524
_RS24825
BWI76_RS24830: BWI76_RS24830 - 5-keto-4-deoxy-D-glucarate aldolase, at 5,173,553 to 5,174,323
_RS24830
Position (kb) 5171
5172
5173 Strain fitness (log2 ratio) -1
0
1 at 5170.816 kb on + strand, within BWI76_RS24810 at 5170.823 kb on + strand, within BWI76_RS24810 at 5171.427 kb on - strand at 5171.463 kb on + strand at 5171.521 kb on + strand at 5171.529 kb on - strand at 5171.529 kb on - strand at 5171.556 kb on + strand, within BWI76_RS24820 at 5172.133 kb on - strand, within BWI76_RS24820 at 5172.248 kb on - strand, within BWI76_RS24820 at 5172.257 kb on + strand, within BWI76_RS24820 at 5172.271 kb on + strand, within BWI76_RS24820 at 5172.394 kb on - strand, within BWI76_RS24820 at 5172.511 kb on - strand at 5172.535 kb on + strand at 5172.604 kb on - strand at 5172.610 kb on - strand at 5172.627 kb on + strand at 5172.650 kb on + strand at 5172.892 kb on - strand, within BWI76_RS24825 at 5173.072 kb on - strand, within BWI76_RS24825 at 5173.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 5,170,816 + BWI76_RS24810 0.50 -0.1 5,170,823 + BWI76_RS24810 0.51 -0.6 5,171,427 - -0.5 5,171,463 + -0.1 5,171,521 + -0.1 5,171,529 - +0.4 5,171,529 - +0.7 5,171,556 + BWI76_RS24820 0.12 -0.1 5,172,133 - BWI76_RS24820 0.62 -0.2 5,172,248 - BWI76_RS24820 0.72 +0.4 5,172,257 + BWI76_RS24820 0.73 -0.4 5,172,271 + BWI76_RS24820 0.74 -0.6 5,172,394 - BWI76_RS24820 0.85 +0.8 5,172,511 - +1.2 5,172,535 + +0.5 5,172,604 - -0.7 5,172,610 - +0.5 5,172,627 + -0.6 5,172,650 + -0.0 5,172,892 - BWI76_RS24825 0.29 +0.6 5,173,072 - BWI76_RS24825 0.49 +0.6 5,173,533 - +0.5
Or see this region's nucleotide sequence