Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24105 and BWI76_RS24110 overlap by 4 nucleotides BWI76_RS24110 and BWI76_RS24115 are separated by 12 nucleotides BWI76_RS24115 and BWI76_RS24120 overlap by 8 nucleotides BWI76_RS24120 and BWI76_RS24125 are separated by 304 nucleotides
BWI76_RS24105: BWI76_RS24105 - resistance protein, at 5,028,208 to 5,028,774
_RS24105
BWI76_RS24110: BWI76_RS24110 - YggU family protein, at 5,028,771 to 5,029,061
_RS24110
BWI76_RS24115: BWI76_RS24115 - non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family, at 5,029,074 to 5,029,667
_RS24115
BWI76_RS24120: BWI76_RS24120 - YggW family oxidoreductase, at 5,029,660 to 5,030,796
_RS24120
BWI76_RS24125: BWI76_RS24125 - hypothetical protein, at 5,031,101 to 5,032,087
_RS24125
Position (kb) 5029
5030
5031 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5028.723 kb on + strand at 5028.759 kb on + strand at 5028.824 kb on + strand, within BWI76_RS24110 at 5028.824 kb on + strand, within BWI76_RS24110 at 5029.038 kb on - strand at 5029.292 kb on - strand, within BWI76_RS24115 at 5029.422 kb on + strand, within BWI76_RS24115 at 5029.461 kb on + strand, within BWI76_RS24115 at 5029.584 kb on + strand, within BWI76_RS24115 at 5029.592 kb on - strand, within BWI76_RS24115 at 5029.592 kb on - strand, within BWI76_RS24115 at 5029.592 kb on - strand, within BWI76_RS24115 at 5029.819 kb on - strand, within BWI76_RS24120 at 5030.128 kb on - strand, within BWI76_RS24120 at 5030.128 kb on - strand, within BWI76_RS24120 at 5030.242 kb on + strand, within BWI76_RS24120 at 5030.282 kb on + strand, within BWI76_RS24120 at 5030.330 kb on + strand at 5030.338 kb on - strand, within BWI76_RS24120 at 5030.486 kb on + strand, within BWI76_RS24120 at 5030.518 kb on - strand at 5030.621 kb on - strand, within BWI76_RS24120 at 5030.654 kb on + strand, within BWI76_RS24120 at 5030.662 kb on - strand, within BWI76_RS24120 at 5030.722 kb on - strand at 5030.756 kb on - strand at 5030.787 kb on - strand at 5030.789 kb on - strand at 5030.793 kb on + strand at 5030.809 kb on - strand at 5030.809 kb on - strand at 5031.003 kb on + strand at 5031.011 kb on - strand at 5031.026 kb on + strand at 5031.064 kb on - strand at 5031.133 kb on + strand at 5031.133 kb on - strand at 5031.159 kb on + strand at 5031.203 kb on + strand, within BWI76_RS24125 at 5031.207 kb on + strand, within BWI76_RS24125 at 5031.237 kb on + strand at 5031.317 kb on - strand, within BWI76_RS24125 at 5031.332 kb on + strand at 5031.332 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.361 kb on + strand, within BWI76_RS24125 at 5031.367 kb on + strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.369 kb on - strand, within BWI76_RS24125 at 5031.374 kb on + strand, within BWI76_RS24125 at 5031.375 kb on - strand, within BWI76_RS24125 at 5031.375 kb on - strand, within BWI76_RS24125 at 5031.394 kb on - strand, within BWI76_RS24125 at 5031.399 kb on - strand, within BWI76_RS24125 at 5031.406 kb on + strand, within BWI76_RS24125 at 5031.406 kb on + strand, within BWI76_RS24125 at 5031.414 kb on - strand, within BWI76_RS24125 at 5031.414 kb on - strand, within BWI76_RS24125 at 5031.414 kb on - strand, within BWI76_RS24125 at 5031.416 kb on + strand, within BWI76_RS24125 at 5031.508 kb on + strand, within BWI76_RS24125 at 5031.509 kb on + strand, within BWI76_RS24125 at 5031.517 kb on - strand, within BWI76_RS24125 at 5031.517 kb on - strand, within BWI76_RS24125 at 5031.519 kb on + strand, within BWI76_RS24125 at 5031.519 kb on + strand, within BWI76_RS24125 at 5031.519 kb on + strand, within BWI76_RS24125 at 5031.527 kb on - strand, within BWI76_RS24125 at 5031.527 kb on - strand, within BWI76_RS24125 at 5031.531 kb on + strand, within BWI76_RS24125 at 5031.531 kb on + strand, within BWI76_RS24125 at 5031.539 kb on - strand, within BWI76_RS24125 at 5031.539 kb on - strand, within BWI76_RS24125 at 5031.539 kb on - strand, within BWI76_RS24125 at 5031.542 kb on + strand, within BWI76_RS24125 at 5031.548 kb on + strand, within BWI76_RS24125 at 5031.599 kb on + strand, within BWI76_RS24125 at 5031.600 kb on + strand, within BWI76_RS24125 at 5031.614 kb on + strand, within BWI76_RS24125 at 5031.619 kb on + strand, within BWI76_RS24125 at 5031.619 kb on + strand, within BWI76_RS24125 at 5031.622 kb on - strand, within BWI76_RS24125 at 5031.622 kb on - strand, within BWI76_RS24125 at 5031.641 kb on - strand at 5031.641 kb on - strand, within BWI76_RS24125 at 5031.641 kb on - strand, within BWI76_RS24125 at 5031.651 kb on - strand, within BWI76_RS24125 at 5031.696 kb on - strand, within BWI76_RS24125 at 5031.713 kb on + strand, within BWI76_RS24125 at 5031.779 kb on - strand, within BWI76_RS24125
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 5,028,723 + -0.4 5,028,759 + -0.2 5,028,824 + BWI76_RS24110 0.18 +0.7 5,028,824 + BWI76_RS24110 0.18 -0.7 5,029,038 - -0.1 5,029,292 - BWI76_RS24115 0.37 +0.2 5,029,422 + BWI76_RS24115 0.59 +0.5 5,029,461 + BWI76_RS24115 0.65 +0.1 5,029,584 + BWI76_RS24115 0.86 -0.0 5,029,592 - BWI76_RS24115 0.87 +0.3 5,029,592 - BWI76_RS24115 0.87 -0.5 5,029,592 - BWI76_RS24115 0.87 -2.9 5,029,819 - BWI76_RS24120 0.14 -1.1 5,030,128 - BWI76_RS24120 0.41 -2.1 5,030,128 - BWI76_RS24120 0.41 -1.9 5,030,242 + BWI76_RS24120 0.51 -1.2 5,030,282 + BWI76_RS24120 0.55 +0.1 5,030,330 + +2.7 5,030,338 - BWI76_RS24120 0.60 -1.0 5,030,486 + BWI76_RS24120 0.73 -1.8 5,030,518 - +1.2 5,030,621 - BWI76_RS24120 0.85 -1.3 5,030,654 + BWI76_RS24120 0.87 -1.1 5,030,662 - BWI76_RS24120 0.88 +0.3 5,030,722 - +1.7 5,030,756 - +0.4 5,030,787 - -0.8 5,030,789 - -0.4 5,030,793 + +1.2 5,030,809 - -1.6 5,030,809 - +1.9 5,031,003 + +2.2 5,031,011 - +0.0 5,031,026 + +1.1 5,031,064 - +2.4 5,031,133 + +0.7 5,031,133 - -0.1 5,031,159 + -0.6 5,031,203 + BWI76_RS24125 0.10 +1.4 5,031,207 + BWI76_RS24125 0.11 +0.6 5,031,237 + -0.6 5,031,317 - BWI76_RS24125 0.22 +1.3 5,031,332 + +0.7 5,031,332 + BWI76_RS24125 0.23 -0.0 5,031,361 + BWI76_RS24125 0.26 -1.0 5,031,361 + BWI76_RS24125 0.26 +0.3 5,031,361 + BWI76_RS24125 0.26 +0.8 5,031,361 + BWI76_RS24125 0.26 -0.5 5,031,361 + BWI76_RS24125 0.26 +0.4 5,031,361 + BWI76_RS24125 0.26 -0.2 5,031,361 + BWI76_RS24125 0.26 +0.1 5,031,361 + BWI76_RS24125 0.26 -0.3 5,031,361 + BWI76_RS24125 0.26 -0.7 5,031,361 + BWI76_RS24125 0.26 -0.7 5,031,361 + BWI76_RS24125 0.26 -0.8 5,031,361 + BWI76_RS24125 0.26 +0.7 5,031,361 + BWI76_RS24125 0.26 -1.4 5,031,367 + BWI76_RS24125 0.27 +0.4 5,031,369 - BWI76_RS24125 0.27 +0.7 5,031,369 - BWI76_RS24125 0.27 +0.3 5,031,369 - BWI76_RS24125 0.27 +0.3 5,031,369 - BWI76_RS24125 0.27 -0.1 5,031,369 - BWI76_RS24125 0.27 +2.7 5,031,369 - BWI76_RS24125 0.27 +1.2 5,031,369 - BWI76_RS24125 0.27 +0.3 5,031,369 - BWI76_RS24125 0.27 -0.8 5,031,369 - BWI76_RS24125 0.27 -0.3 5,031,369 - BWI76_RS24125 0.27 -0.5 5,031,369 - BWI76_RS24125 0.27 -0.2 5,031,369 - BWI76_RS24125 0.27 -1.3 5,031,369 - BWI76_RS24125 0.27 -0.2 5,031,369 - BWI76_RS24125 0.27 -0.1 5,031,369 - BWI76_RS24125 0.27 -0.8 5,031,369 - BWI76_RS24125 0.27 -2.0 5,031,369 - BWI76_RS24125 0.27 +0.2 5,031,374 + BWI76_RS24125 0.28 -0.6 5,031,375 - BWI76_RS24125 0.28 +2.7 5,031,375 - BWI76_RS24125 0.28 +0.5 5,031,394 - BWI76_RS24125 0.30 -0.4 5,031,399 - BWI76_RS24125 0.30 +3.7 5,031,406 + BWI76_RS24125 0.31 +0.1 5,031,406 + BWI76_RS24125 0.31 +0.6 5,031,414 - BWI76_RS24125 0.32 +0.6 5,031,414 - BWI76_RS24125 0.32 -0.5 5,031,414 - BWI76_RS24125 0.32 -2.1 5,031,416 + BWI76_RS24125 0.32 -1.4 5,031,508 + BWI76_RS24125 0.41 -2.3 5,031,509 + BWI76_RS24125 0.41 +0.6 5,031,517 - BWI76_RS24125 0.42 +1.4 5,031,517 - BWI76_RS24125 0.42 +0.1 5,031,519 + BWI76_RS24125 0.42 -0.4 5,031,519 + BWI76_RS24125 0.42 -0.2 5,031,519 + BWI76_RS24125 0.42 +0.6 5,031,527 - BWI76_RS24125 0.43 +0.2 5,031,527 - BWI76_RS24125 0.43 -1.2 5,031,531 + BWI76_RS24125 0.44 -0.1 5,031,531 + BWI76_RS24125 0.44 -1.1 5,031,539 - BWI76_RS24125 0.44 -0.6 5,031,539 - BWI76_RS24125 0.44 -1.0 5,031,539 - BWI76_RS24125 0.44 -0.2 5,031,542 + BWI76_RS24125 0.45 +0.4 5,031,548 + BWI76_RS24125 0.45 -0.8 5,031,599 + BWI76_RS24125 0.50 +0.9 5,031,600 + BWI76_RS24125 0.51 +0.1 5,031,614 + BWI76_RS24125 0.52 -0.7 5,031,619 + BWI76_RS24125 0.52 +0.3 5,031,619 + BWI76_RS24125 0.52 +0.2 5,031,622 - BWI76_RS24125 0.53 +4.7 5,031,622 - BWI76_RS24125 0.53 +1.4 5,031,641 - +0.7 5,031,641 - BWI76_RS24125 0.55 -0.1 5,031,641 - BWI76_RS24125 0.55 -0.2 5,031,651 - BWI76_RS24125 0.56 -0.7 5,031,696 - BWI76_RS24125 0.60 -1.6 5,031,713 + BWI76_RS24125 0.62 -0.1 5,031,779 - BWI76_RS24125 0.69 +1.5
Or see this region's nucleotide sequence