Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23455

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23450 and BWI76_RS23455 are separated by 96 nucleotidesBWI76_RS23455 and BWI76_RS23460 are separated by 110 nucleotides BWI76_RS23450: BWI76_RS23450 - LysR family transcriptional regulator, at 4,893,121 to 4,893,993 _RS23450 BWI76_RS23455: BWI76_RS23455 - Na(+)-translocating NADH-quinone reductase subunit E, at 4,894,090 to 4,894,578 _RS23455 BWI76_RS23460: BWI76_RS23460 - hypothetical protein, at 4,894,689 to 4,895,918 _RS23460 Position (kb) 4894 4895Strain fitness (log2 ratio) -1 0 1 2 3 4at 4893.116 kb on + strandat 4893.350 kb on + strand, within BWI76_RS23450at 4893.353 kb on - strand, within BWI76_RS23450at 4893.393 kb on - strand, within BWI76_RS23450at 4893.416 kb on - strand, within BWI76_RS23450at 4893.440 kb on + strand, within BWI76_RS23450at 4893.440 kb on + strand, within BWI76_RS23450at 4893.440 kb on + strand, within BWI76_RS23450at 4893.440 kb on + strand, within BWI76_RS23450at 4893.448 kb on - strand, within BWI76_RS23450at 4893.453 kb on - strandat 4893.699 kb on + strand, within BWI76_RS23450at 4893.714 kb on - strand, within BWI76_RS23450at 4893.725 kb on - strandat 4893.790 kb on + strand, within BWI76_RS23450at 4893.790 kb on + strand, within BWI76_RS23450at 4893.791 kb on + strand, within BWI76_RS23450at 4893.798 kb on - strand, within BWI76_RS23450at 4893.798 kb on - strand, within BWI76_RS23450at 4894.081 kb on + strandat 4894.110 kb on + strandat 4894.206 kb on - strand, within BWI76_RS23455at 4894.442 kb on + strand, within BWI76_RS23455at 4894.490 kb on + strand, within BWI76_RS23455at 4894.806 kb on - strandat 4894.989 kb on + strand, within BWI76_RS23460at 4894.994 kb on + strand, within BWI76_RS23460at 4895.019 kb on - strand, within BWI76_RS23460at 4895.136 kb on - strand, within BWI76_RS23460at 4895.223 kb on + strand, within BWI76_RS23460

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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4,893,116 + -0.6
4,893,350 + BWI76_RS23450 0.26 +0.1
4,893,353 - BWI76_RS23450 0.27 -0.2
4,893,393 - BWI76_RS23450 0.31 -0.1
4,893,416 - BWI76_RS23450 0.34 -0.1
4,893,440 + BWI76_RS23450 0.37 -0.0
4,893,440 + BWI76_RS23450 0.37 -0.5
4,893,440 + BWI76_RS23450 0.37 +0.8
4,893,440 + BWI76_RS23450 0.37 +0.2
4,893,448 - BWI76_RS23450 0.37 -1.4
4,893,453 - +1.8
4,893,699 + BWI76_RS23450 0.66 -0.9
4,893,714 - BWI76_RS23450 0.68 -1.2
4,893,725 - +1.2
4,893,790 + BWI76_RS23450 0.77 -0.0
4,893,790 + BWI76_RS23450 0.77 -0.7
4,893,791 + BWI76_RS23450 0.77 -1.0
4,893,798 - BWI76_RS23450 0.78 -0.4
4,893,798 - BWI76_RS23450 0.78 +0.6
4,894,081 + +0.4
4,894,110 + +0.2
4,894,206 - BWI76_RS23455 0.24 +1.8
4,894,442 + BWI76_RS23455 0.72 -0.5
4,894,490 + BWI76_RS23455 0.82 +0.4
4,894,806 - +0.2
4,894,989 + BWI76_RS23460 0.24 +0.4
4,894,994 + BWI76_RS23460 0.25 +0.9
4,895,019 - BWI76_RS23460 0.27 +1.2
4,895,136 - BWI76_RS23460 0.36 -0.5
4,895,223 + BWI76_RS23460 0.43 +4.1

Or see this region's nucleotide sequence