Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20085

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20080 and BWI76_RS20085 are separated by 67 nucleotidesBWI76_RS20085 and BWI76_RS20090 are separated by 60 nucleotides BWI76_RS20080: BWI76_RS20080 - isochorismate synthase MenF, at 4,206,944 to 4,208,269 _RS20080 BWI76_RS20085: BWI76_RS20085 - GNAT family N-acetyltransferase, at 4,208,337 to 4,208,798 _RS20085 BWI76_RS20090: BWI76_RS20090 - ribonuclease Z, at 4,208,859 to 4,209,776 _RS20090 Position (kb) 4208 4209Strain fitness (log2 ratio) -2 -1 0 1 2at 4207.563 kb on - strand, within BWI76_RS20080at 4207.664 kb on + strand, within BWI76_RS20080at 4207.671 kb on + strand, within BWI76_RS20080at 4207.872 kb on - strand, within BWI76_RS20080at 4207.911 kb on - strand, within BWI76_RS20080at 4207.911 kb on - strand, within BWI76_RS20080at 4208.076 kb on + strand, within BWI76_RS20080at 4208.122 kb on + strand, within BWI76_RS20080at 4208.203 kb on + strandat 4208.408 kb on + strand, within BWI76_RS20085at 4208.525 kb on - strand, within BWI76_RS20085at 4208.743 kb on + strand, within BWI76_RS20085at 4208.799 kb on - strandat 4208.923 kb on - strandat 4209.076 kb on + strand, within BWI76_RS20090at 4209.110 kb on - strand, within BWI76_RS20090at 4209.144 kb on - strand, within BWI76_RS20090at 4209.223 kb on + strand, within BWI76_RS20090at 4209.396 kb on - strand, within BWI76_RS20090at 4209.564 kb on - strand, within BWI76_RS20090at 4209.682 kb on + strand, within BWI76_RS20090at 4209.758 kb on + strandat 4209.758 kb on + strandat 4209.758 kb on + strandat 4209.766 kb on - strandat 4209.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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4,207,563 - BWI76_RS20080 0.47 +0.2
4,207,664 + BWI76_RS20080 0.54 +0.4
4,207,671 + BWI76_RS20080 0.55 +0.8
4,207,872 - BWI76_RS20080 0.70 +0.2
4,207,911 - BWI76_RS20080 0.73 -0.2
4,207,911 - BWI76_RS20080 0.73 -0.7
4,208,076 + BWI76_RS20080 0.85 -0.3
4,208,122 + BWI76_RS20080 0.89 +0.3
4,208,203 + +1.4
4,208,408 + BWI76_RS20085 0.15 -1.0
4,208,525 - BWI76_RS20085 0.41 +2.2
4,208,743 + BWI76_RS20085 0.88 +0.7
4,208,799 - +0.0
4,208,923 - +0.4
4,209,076 + BWI76_RS20090 0.24 -0.2
4,209,110 - BWI76_RS20090 0.27 -1.2
4,209,144 - BWI76_RS20090 0.31 -0.2
4,209,223 + BWI76_RS20090 0.40 -1.7
4,209,396 - BWI76_RS20090 0.58 -2.2
4,209,564 - BWI76_RS20090 0.77 +0.5
4,209,682 + BWI76_RS20090 0.90 -1.3
4,209,758 + -0.8
4,209,758 + -1.4
4,209,758 + -0.6
4,209,766 - -0.1
4,209,766 - -0.0

Or see this region's nucleotide sequence