Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19705 and BWI76_RS19710 are separated by 32 nucleotides BWI76_RS19710 and BWI76_RS19715 are separated by 95 nucleotides
BWI76_RS19705: BWI76_RS19705 - kinase, at 4,118,306 to 4,119,394
_RS19705
BWI76_RS19710: BWI76_RS19710 - NupC/NupG family nucleoside CNT transporter, at 4,119,427 to 4,120,677
_RS19710
BWI76_RS19715: BWI76_RS19715 - pseudouridine-5'-phosphate glycosidase, at 4,120,773 to 4,121,708
_RS19715
Position (kb)
4119
4120
4121 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4118.511 kb on - strand, within BWI76_RS19705 at 4118.776 kb on + strand, within BWI76_RS19705 at 4118.876 kb on + strand, within BWI76_RS19705 at 4118.918 kb on + strand, within BWI76_RS19705 at 4119.258 kb on - strand, within BWI76_RS19705 at 4119.258 kb on - strand, within BWI76_RS19705 at 4119.470 kb on + strand at 4119.474 kb on - strand at 4119.744 kb on - strand, within BWI76_RS19710 at 4119.813 kb on + strand, within BWI76_RS19710 at 4120.020 kb on + strand, within BWI76_RS19710 at 4120.572 kb on + strand at 4120.646 kb on + strand at 4120.659 kb on - strand at 4120.712 kb on + strand at 4120.777 kb on - strand at 4120.832 kb on - strand at 4121.025 kb on + strand, within BWI76_RS19715 at 4121.068 kb on + strand, within BWI76_RS19715 at 4121.069 kb on - strand, within BWI76_RS19715 at 4121.074 kb on + strand, within BWI76_RS19715 at 4121.079 kb on + strand, within BWI76_RS19715 at 4121.084 kb on + strand, within BWI76_RS19715 at 4121.085 kb on - strand, within BWI76_RS19715 at 4121.087 kb on - strand, within BWI76_RS19715 at 4121.096 kb on + strand, within BWI76_RS19715 at 4121.116 kb on - strand, within BWI76_RS19715 at 4121.132 kb on + strand, within BWI76_RS19715 at 4121.140 kb on - strand, within BWI76_RS19715 at 4121.162 kb on + strand, within BWI76_RS19715 at 4121.163 kb on + strand, within BWI76_RS19715 at 4121.170 kb on - strand, within BWI76_RS19715 at 4121.221 kb on + strand, within BWI76_RS19715 at 4121.229 kb on - strand, within BWI76_RS19715 at 4121.229 kb on - strand, within BWI76_RS19715 at 4121.229 kb on - strand, within BWI76_RS19715 at 4121.229 kb on - strand, within BWI76_RS19715 at 4121.229 kb on - strand, within BWI76_RS19715 at 4121.231 kb on + strand, within BWI76_RS19715 at 4121.239 kb on - strand, within BWI76_RS19715 at 4121.239 kb on - strand, within BWI76_RS19715 at 4121.239 kb on - strand, within BWI76_RS19715 at 4121.255 kb on + strand, within BWI76_RS19715 at 4121.298 kb on - strand, within BWI76_RS19715 at 4121.298 kb on - strand, within BWI76_RS19715 at 4121.298 kb on - strand, within BWI76_RS19715 at 4121.300 kb on - strand, within BWI76_RS19715 at 4121.305 kb on - strand, within BWI76_RS19715 at 4121.308 kb on - strand, within BWI76_RS19715 at 4121.338 kb on - strand, within BWI76_RS19715 at 4121.367 kb on + strand, within BWI76_RS19715 at 4121.374 kb on - strand, within BWI76_RS19715 at 4121.374 kb on - strand, within BWI76_RS19715 at 4121.375 kb on - strand, within BWI76_RS19715 at 4121.375 kb on - strand, within BWI76_RS19715 at 4121.385 kb on + strand, within BWI76_RS19715 at 4121.385 kb on + strand, within BWI76_RS19715 at 4121.437 kb on + strand, within BWI76_RS19715 at 4121.437 kb on - strand, within BWI76_RS19715 at 4121.439 kb on + strand, within BWI76_RS19715 at 4121.439 kb on + strand, within BWI76_RS19715 at 4121.439 kb on + strand, within BWI76_RS19715 at 4121.439 kb on + strand, within BWI76_RS19715 at 4121.439 kb on + strand, within BWI76_RS19715 at 4121.439 kb on + strand, within BWI76_RS19715 at 4121.445 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.447 kb on - strand, within BWI76_RS19715 at 4121.452 kb on - strand, within BWI76_RS19715 at 4121.462 kb on + strand, within BWI76_RS19715 at 4121.462 kb on - strand, within BWI76_RS19715 at 4121.470 kb on - strand, within BWI76_RS19715 at 4121.486 kb on - strand, within BWI76_RS19715 at 4121.486 kb on - strand, within BWI76_RS19715 at 4121.486 kb on - strand, within BWI76_RS19715 at 4121.533 kb on + strand, within BWI76_RS19715 at 4121.557 kb on + strand, within BWI76_RS19715 at 4121.589 kb on + strand, within BWI76_RS19715 at 4121.590 kb on + strand, within BWI76_RS19715 at 4121.611 kb on - strand, within BWI76_RS19715
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 4,118,511 - BWI76_RS19705 0.19 -0.5 4,118,776 + BWI76_RS19705 0.43 +1.5 4,118,876 + BWI76_RS19705 0.52 +0.3 4,118,918 + BWI76_RS19705 0.56 -0.1 4,119,258 - BWI76_RS19705 0.87 +0.4 4,119,258 - BWI76_RS19705 0.87 +3.0 4,119,470 + -0.9 4,119,474 - +0.5 4,119,744 - BWI76_RS19710 0.25 -0.7 4,119,813 + BWI76_RS19710 0.31 -1.5 4,120,020 + BWI76_RS19710 0.47 -0.7 4,120,572 + -2.2 4,120,646 + +1.0 4,120,659 - +0.1 4,120,712 + +1.8 4,120,777 - -0.1 4,120,832 - -0.2 4,121,025 + BWI76_RS19715 0.27 +0.5 4,121,068 + BWI76_RS19715 0.32 -0.2 4,121,069 - BWI76_RS19715 0.32 -0.9 4,121,074 + BWI76_RS19715 0.32 -1.3 4,121,079 + BWI76_RS19715 0.33 -0.0 4,121,084 + BWI76_RS19715 0.33 -0.0 4,121,085 - BWI76_RS19715 0.33 +0.3 4,121,087 - BWI76_RS19715 0.34 -0.4 4,121,096 + BWI76_RS19715 0.35 -0.4 4,121,116 - BWI76_RS19715 0.37 +0.0 4,121,132 + BWI76_RS19715 0.38 +1.2 4,121,140 - BWI76_RS19715 0.39 +0.0 4,121,162 + BWI76_RS19715 0.42 +0.2 4,121,163 + BWI76_RS19715 0.42 +0.2 4,121,170 - BWI76_RS19715 0.42 -0.4 4,121,221 + BWI76_RS19715 0.48 +0.3 4,121,229 - BWI76_RS19715 0.49 +0.2 4,121,229 - BWI76_RS19715 0.49 +0.2 4,121,229 - BWI76_RS19715 0.49 -0.4 4,121,229 - BWI76_RS19715 0.49 +3.9 4,121,229 - BWI76_RS19715 0.49 +0.5 4,121,231 + BWI76_RS19715 0.49 -1.2 4,121,239 - BWI76_RS19715 0.50 -0.4 4,121,239 - BWI76_RS19715 0.50 +0.0 4,121,239 - BWI76_RS19715 0.50 +0.3 4,121,255 + BWI76_RS19715 0.51 -0.1 4,121,298 - BWI76_RS19715 0.56 -1.0 4,121,298 - BWI76_RS19715 0.56 -1.0 4,121,298 - BWI76_RS19715 0.56 +2.2 4,121,300 - BWI76_RS19715 0.56 -1.4 4,121,305 - BWI76_RS19715 0.57 +1.0 4,121,308 - BWI76_RS19715 0.57 +0.6 4,121,338 - BWI76_RS19715 0.60 -0.3 4,121,367 + BWI76_RS19715 0.63 -0.5 4,121,374 - BWI76_RS19715 0.64 -0.3 4,121,374 - BWI76_RS19715 0.64 +1.9 4,121,375 - BWI76_RS19715 0.64 +0.5 4,121,375 - BWI76_RS19715 0.64 +0.4 4,121,385 + BWI76_RS19715 0.65 -0.3 4,121,385 + BWI76_RS19715 0.65 +0.0 4,121,437 + BWI76_RS19715 0.71 +0.2 4,121,437 - BWI76_RS19715 0.71 +0.1 4,121,439 + BWI76_RS19715 0.71 -1.1 4,121,439 + BWI76_RS19715 0.71 -0.3 4,121,439 + BWI76_RS19715 0.71 -1.6 4,121,439 + BWI76_RS19715 0.71 -0.6 4,121,439 + BWI76_RS19715 0.71 +1.1 4,121,439 + BWI76_RS19715 0.71 +1.7 4,121,445 - BWI76_RS19715 0.72 +0.9 4,121,447 - BWI76_RS19715 0.72 +3.3 4,121,447 - BWI76_RS19715 0.72 -0.7 4,121,447 - BWI76_RS19715 0.72 -1.5 4,121,447 - BWI76_RS19715 0.72 +4.2 4,121,447 - BWI76_RS19715 0.72 -0.3 4,121,447 - BWI76_RS19715 0.72 -0.4 4,121,447 - BWI76_RS19715 0.72 +0.9 4,121,447 - BWI76_RS19715 0.72 -1.6 4,121,447 - BWI76_RS19715 0.72 +0.9 4,121,452 - BWI76_RS19715 0.73 +0.5 4,121,462 + BWI76_RS19715 0.74 -1.1 4,121,462 - BWI76_RS19715 0.74 +1.2 4,121,470 - BWI76_RS19715 0.74 -1.2 4,121,486 - BWI76_RS19715 0.76 -0.7 4,121,486 - BWI76_RS19715 0.76 -0.1 4,121,486 - BWI76_RS19715 0.76 -0.3 4,121,533 + BWI76_RS19715 0.81 -0.5 4,121,557 + BWI76_RS19715 0.84 +1.0 4,121,589 + BWI76_RS19715 0.87 -0.3 4,121,590 + BWI76_RS19715 0.87 -0.2 4,121,611 - BWI76_RS19715 0.90 -2.4
Or see this region's nucleotide sequence