Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19655

Experiment: Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19650 and BWI76_RS19655 are separated by 155 nucleotidesBWI76_RS19655 and BWI76_RS19660 are separated by 15 nucleotidesBWI76_RS19660 and BWI76_RS19665 are separated by 242 nucleotides BWI76_RS19650: BWI76_RS19650 - DNA-binding transcriptional regulator GalS, at 4,106,896 to 4,107,918 _RS19650 BWI76_RS19655: BWI76_RS19655 - hypothetical protein, at 4,108,074 to 4,109,231 _RS19655 BWI76_RS19660: BWI76_RS19660 - GTP cyclohydrolase I FolE, at 4,109,247 to 4,109,915 _RS19660 BWI76_RS19665: BWI76_RS19665 - hypothetical protein, at 4,110,158 to 4,110,355 _RS19665 Position (kb) 4108 4109 4110Strain fitness (log2 ratio) -1 0 1 2 3 4at 4107.181 kb on + strand, within BWI76_RS19650at 4107.198 kb on - strand, within BWI76_RS19650at 4107.207 kb on + strand, within BWI76_RS19650at 4107.398 kb on + strand, within BWI76_RS19650at 4107.434 kb on - strand, within BWI76_RS19650at 4107.528 kb on + strand, within BWI76_RS19650at 4107.680 kb on + strand, within BWI76_RS19650at 4107.850 kb on + strandat 4108.026 kb on - strandat 4108.231 kb on - strand, within BWI76_RS19655at 4108.385 kb on - strand, within BWI76_RS19655at 4108.552 kb on + strand, within BWI76_RS19655at 4109.085 kb on + strand, within BWI76_RS19655at 4109.085 kb on + strand, within BWI76_RS19655at 4109.125 kb on + strandat 4109.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml
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4,107,181 + BWI76_RS19650 0.28 +1.3
4,107,198 - BWI76_RS19650 0.30 -0.2
4,107,207 + BWI76_RS19650 0.30 +0.2
4,107,398 + BWI76_RS19650 0.49 +1.8
4,107,434 - BWI76_RS19650 0.53 -1.3
4,107,528 + BWI76_RS19650 0.62 +0.2
4,107,680 + BWI76_RS19650 0.77 -0.1
4,107,850 + -1.3
4,108,026 - -0.6
4,108,231 - BWI76_RS19655 0.14 -0.1
4,108,385 - BWI76_RS19655 0.27 -0.7
4,108,552 + BWI76_RS19655 0.41 +0.0
4,109,085 + BWI76_RS19655 0.87 +0.6
4,109,085 + BWI76_RS19655 0.87 +3.9
4,109,125 + +0.9
4,109,236 - -1.2

Or see this region's nucleotide sequence