Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19650 and BWI76_RS19655 are separated by 155 nucleotides BWI76_RS19655 and BWI76_RS19660 are separated by 15 nucleotides BWI76_RS19660 and BWI76_RS19665 are separated by 242 nucleotides
BWI76_RS19650: BWI76_RS19650 - DNA-binding transcriptional regulator GalS, at 4,106,896 to 4,107,918
_RS19650
BWI76_RS19655: BWI76_RS19655 - hypothetical protein, at 4,108,074 to 4,109,231
_RS19655
BWI76_RS19660: BWI76_RS19660 - GTP cyclohydrolase I FolE, at 4,109,247 to 4,109,915
_RS19660
BWI76_RS19665: BWI76_RS19665 - hypothetical protein, at 4,110,158 to 4,110,355
_RS19665
Position (kb)
4108
4109
4110 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4107.181 kb on + strand, within BWI76_RS19650 at 4107.198 kb on - strand, within BWI76_RS19650 at 4107.207 kb on + strand, within BWI76_RS19650 at 4107.398 kb on + strand, within BWI76_RS19650 at 4107.434 kb on - strand, within BWI76_RS19650 at 4107.528 kb on + strand, within BWI76_RS19650 at 4107.680 kb on + strand, within BWI76_RS19650 at 4107.850 kb on + strand at 4108.026 kb on - strand at 4108.231 kb on - strand, within BWI76_RS19655 at 4108.385 kb on - strand, within BWI76_RS19655 at 4108.552 kb on + strand, within BWI76_RS19655 at 4109.085 kb on + strand, within BWI76_RS19655 at 4109.085 kb on + strand, within BWI76_RS19655 at 4109.125 kb on + strand at 4109.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 4,107,181 + BWI76_RS19650 0.28 +1.3 4,107,198 - BWI76_RS19650 0.30 -0.2 4,107,207 + BWI76_RS19650 0.30 +0.2 4,107,398 + BWI76_RS19650 0.49 +1.8 4,107,434 - BWI76_RS19650 0.53 -1.3 4,107,528 + BWI76_RS19650 0.62 +0.2 4,107,680 + BWI76_RS19650 0.77 -0.1 4,107,850 + -1.3 4,108,026 - -0.6 4,108,231 - BWI76_RS19655 0.14 -0.1 4,108,385 - BWI76_RS19655 0.27 -0.7 4,108,552 + BWI76_RS19655 0.41 +0.0 4,109,085 + BWI76_RS19655 0.87 +0.6 4,109,085 + BWI76_RS19655 0.87 +3.9 4,109,125 + +0.9 4,109,236 - -1.2
Or see this region's nucleotide sequence