Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18545 and BWI76_RS18550 are separated by 827 nucleotides BWI76_RS18550 and BWI76_RS18555 are separated by 124 nucleotides
BWI76_RS18545: BWI76_RS18545 - AMP nucleosidase, at 3,848,447 to 3,849,901
_RS18545
BWI76_RS18550: BWI76_RS18550 - tRNA-Asn, at 3,850,729 to 3,850,804
_RS18550
BWI76_RS18555: BWI76_RS18555 - MATE family multidrug exporter, at 3,850,929 to 3,852,386
_RS18555
Position (kb)
3850
3851 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3849.821 kb on - strand at 3849.846 kb on - strand at 3849.865 kb on - strand at 3849.869 kb on - strand at 3849.887 kb on + strand at 3849.895 kb on + strand at 3849.902 kb on + strand at 3849.907 kb on + strand at 3849.907 kb on + strand at 3849.915 kb on - strand at 3849.915 kb on - strand at 3849.915 kb on - strand at 3849.915 kb on - strand at 3849.915 kb on - strand at 3849.917 kb on + strand at 3849.931 kb on + strand at 3849.931 kb on - strand at 3849.952 kb on + strand at 3849.959 kb on - strand at 3849.960 kb on - strand at 3849.965 kb on + strand at 3849.965 kb on + strand at 3849.965 kb on + strand at 3849.965 kb on + strand at 3849.965 kb on + strand at 3849.965 kb on + strand at 3849.965 kb on + strand at 3849.973 kb on - strand at 3849.973 kb on - strand at 3849.973 kb on - strand at 3849.973 kb on - strand at 3849.973 kb on - strand at 3850.008 kb on + strand at 3850.011 kb on - strand at 3850.219 kb on - strand at 3850.323 kb on + strand at 3850.329 kb on + strand at 3850.329 kb on + strand at 3850.336 kb on + strand at 3850.336 kb on + strand at 3850.342 kb on - strand at 3850.344 kb on - strand at 3850.344 kb on - strand at 3850.344 kb on - strand at 3850.348 kb on + strand at 3850.353 kb on + strand at 3850.357 kb on - strand at 3850.361 kb on - strand at 3850.375 kb on + strand at 3850.412 kb on + strand at 3850.412 kb on + strand at 3850.420 kb on - strand at 3850.420 kb on - strand at 3850.435 kb on - strand at 3850.446 kb on + strand at 3850.459 kb on - strand at 3850.471 kb on + strand at 3850.479 kb on - strand at 3850.498 kb on + strand at 3850.550 kb on - strand at 3850.573 kb on + strand at 3850.573 kb on + strand at 3850.573 kb on + strand at 3850.581 kb on - strand at 3850.592 kb on + strand at 3850.627 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.632 kb on + strand at 3850.636 kb on + strand at 3850.638 kb on + strand at 3850.638 kb on + strand at 3850.640 kb on - strand at 3850.640 kb on - strand at 3850.640 kb on - strand at 3850.640 kb on - strand at 3850.640 kb on - strand at 3850.640 kb on - strand at 3850.640 kb on - strand at 3850.640 kb on - strand at 3850.641 kb on + strand at 3850.641 kb on - strand at 3850.644 kb on - strand at 3850.648 kb on + strand at 3850.648 kb on + strand at 3850.753 kb on - strand, within BWI76_RS18550 at 3851.110 kb on - strand, within BWI76_RS18555 at 3851.180 kb on + strand, within BWI76_RS18555 at 3851.201 kb on - strand, within BWI76_RS18555 at 3851.272 kb on - strand, within BWI76_RS18555 at 3851.291 kb on - strand, within BWI76_RS18555 at 3851.380 kb on + strand, within BWI76_RS18555 at 3851.562 kb on + strand, within BWI76_RS18555 at 3851.641 kb on - strand, within BWI76_RS18555
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 3,849,821 - -1.0 3,849,846 - -1.9 3,849,865 - +1.2 3,849,869 - +0.4 3,849,887 + +0.3 3,849,895 + +0.1 3,849,902 + -0.7 3,849,907 + -0.7 3,849,907 + +0.3 3,849,915 - +0.4 3,849,915 - +0.7 3,849,915 - +1.4 3,849,915 - +0.6 3,849,915 - +0.9 3,849,917 + +1.7 3,849,931 + -0.8 3,849,931 - -1.4 3,849,952 + +0.2 3,849,959 - +3.9 3,849,960 - -1.6 3,849,965 + +1.0 3,849,965 + +2.8 3,849,965 + +1.0 3,849,965 + +0.0 3,849,965 + +1.6 3,849,965 + -3.2 3,849,965 + +2.0 3,849,973 - -0.5 3,849,973 - -0.1 3,849,973 - -0.6 3,849,973 - +3.8 3,849,973 - -0.0 3,850,008 + +0.6 3,850,011 - -0.3 3,850,219 - +0.3 3,850,323 + +1.1 3,850,329 + +1.3 3,850,329 + +1.5 3,850,336 + +2.5 3,850,336 + -0.2 3,850,342 - -0.5 3,850,344 - +1.8 3,850,344 - -0.2 3,850,344 - -1.8 3,850,348 + -0.8 3,850,353 + +0.9 3,850,357 - +0.6 3,850,361 - -0.8 3,850,375 + -0.5 3,850,412 + +0.2 3,850,412 + -0.2 3,850,420 - -0.9 3,850,420 - +0.6 3,850,435 - -1.2 3,850,446 + +0.6 3,850,459 - +0.3 3,850,471 + +0.4 3,850,479 - +0.5 3,850,498 + -0.5 3,850,550 - +0.2 3,850,573 + -0.3 3,850,573 + +1.1 3,850,573 + -0.6 3,850,581 - +0.5 3,850,592 + +0.8 3,850,627 + -0.1 3,850,632 + -1.4 3,850,632 + +0.1 3,850,632 + +1.3 3,850,632 + -0.1 3,850,632 + -0.8 3,850,632 + -0.7 3,850,632 + +0.4 3,850,632 + +0.2 3,850,632 + +0.1 3,850,632 + +0.6 3,850,632 + -1.1 3,850,632 + +0.4 3,850,632 + -1.2 3,850,636 + -0.6 3,850,638 + +1.2 3,850,638 + -0.9 3,850,640 - +0.5 3,850,640 - -0.5 3,850,640 - -0.7 3,850,640 - -2.1 3,850,640 - -0.2 3,850,640 - +0.1 3,850,640 - +0.9 3,850,640 - -2.3 3,850,641 + -0.7 3,850,641 - -0.4 3,850,644 - +0.0 3,850,648 + +1.7 3,850,648 + -0.3 3,850,753 - BWI76_RS18550 0.32 -1.7 3,851,110 - BWI76_RS18555 0.12 +0.5 3,851,180 + BWI76_RS18555 0.17 -0.5 3,851,201 - BWI76_RS18555 0.19 -0.5 3,851,272 - BWI76_RS18555 0.24 -0.5 3,851,291 - BWI76_RS18555 0.25 -0.7 3,851,380 + BWI76_RS18555 0.31 -0.5 3,851,562 + BWI76_RS18555 0.43 +0.5 3,851,641 - BWI76_RS18555 0.49 +4.5
Or see this region's nucleotide sequence