Experiment: Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17065 and BWI76_RS17070 are separated by 342 nucleotides BWI76_RS17070 and BWI76_RS17075 are separated by 154 nucleotides
BWI76_RS17065: BWI76_RS17065 - phosphoenolpyruvate synthase, at 3,540,060 to 3,542,438
_RS17065
BWI76_RS17070: BWI76_RS17070 - phosphoenolpyruvate synthase regulatory protein, at 3,542,781 to 3,543,614
_RS17070
BWI76_RS17075: BWI76_RS17075 - 3-deoxy-7-phosphoheptulonate synthase, at 3,543,769 to 3,544,815
_RS17075
Position (kb)
3542
3543
3544 Strain fitness (log2 ratio)
-1
0
1 at 3542.225 kb on + strand at 3542.322 kb on + strand at 3542.363 kb on + strand at 3542.368 kb on + strand at 3542.381 kb on - strand at 3542.381 kb on - strand at 3542.381 kb on - strand at 3542.381 kb on - strand at 3542.391 kb on + strand at 3542.396 kb on + strand at 3542.396 kb on + strand at 3542.404 kb on - strand at 3542.404 kb on - strand at 3542.411 kb on - strand at 3542.428 kb on + strand at 3542.430 kb on + strand at 3542.430 kb on + strand at 3542.444 kb on - strand at 3542.496 kb on + strand at 3542.510 kb on + strand at 3542.581 kb on + strand at 3542.600 kb on - strand at 3542.761 kb on + strand at 3542.788 kb on + strand at 3542.788 kb on + strand at 3542.788 kb on + strand at 3542.788 kb on + strand at 3542.796 kb on - strand at 3542.796 kb on - strand at 3542.844 kb on + strand at 3542.844 kb on + strand at 3542.844 kb on + strand at 3542.877 kb on + strand, within BWI76_RS17070 at 3542.885 kb on + strand, within BWI76_RS17070 at 3542.890 kb on + strand, within BWI76_RS17070 at 3542.940 kb on + strand, within BWI76_RS17070 at 3543.189 kb on - strand, within BWI76_RS17070 at 3543.220 kb on + strand, within BWI76_RS17070 at 3543.539 kb on - strand at 3543.670 kb on + strand at 3543.910 kb on + strand, within BWI76_RS17075 at 3544.161 kb on + strand, within BWI76_RS17075 at 3544.279 kb on - strand, within BWI76_RS17075 at 3544.310 kb on - strand, within BWI76_RS17075 at 3544.444 kb on - strand, within BWI76_RS17075
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.001 mg/ml remove 3,542,225 + -0.5 3,542,322 + -0.1 3,542,363 + -0.7 3,542,368 + -0.3 3,542,381 - -0.5 3,542,381 - -0.2 3,542,381 - -0.1 3,542,381 - -0.6 3,542,391 + +0.4 3,542,396 + +1.2 3,542,396 + -0.3 3,542,404 - -0.5 3,542,404 - -0.4 3,542,411 - -0.6 3,542,428 + -0.3 3,542,430 + -0.4 3,542,430 + -0.2 3,542,444 - -0.4 3,542,496 + -0.4 3,542,510 + +0.8 3,542,581 + +0.7 3,542,600 - +1.0 3,542,761 + -1.2 3,542,788 + +0.0 3,542,788 + -0.4 3,542,788 + -1.3 3,542,788 + -0.2 3,542,796 - +0.8 3,542,796 - -0.2 3,542,844 + +0.5 3,542,844 + +1.3 3,542,844 + -0.1 3,542,877 + BWI76_RS17070 0.12 -0.8 3,542,885 + BWI76_RS17070 0.12 -0.9 3,542,890 + BWI76_RS17070 0.13 +0.2 3,542,940 + BWI76_RS17070 0.19 -1.2 3,543,189 - BWI76_RS17070 0.49 -1.2 3,543,220 + BWI76_RS17070 0.53 +0.4 3,543,539 - -0.1 3,543,670 + +0.6 3,543,910 + BWI76_RS17075 0.13 -0.3 3,544,161 + BWI76_RS17075 0.37 -0.0 3,544,279 - BWI76_RS17075 0.49 -0.6 3,544,310 - BWI76_RS17075 0.52 -1.5 3,544,444 - BWI76_RS17075 0.64 -0.5
Or see this region's nucleotide sequence